View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_272 (Length: 232)
Name: NF6872A_low_272
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_272 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30841587 - 30841800
Alignment:
| Q |
1 |
gagaccattgttgggttacgagaggagcccgatggatcatcctcattagactaagagcgatcatacaagtgaattgtacaccccatctttactcaaaatc |
100 |
Q |
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| T |
30841587 |
gagaccactgttgcgttacgagaggagcccgatggatcatccacattggactcagagcgatcatacaagtgaattgtacaccccatctttactcaaaatc |
30841686 |
T |
|
| Q |
101 |
gtaaccttcacttttaaaacaatgtaaaacttctacctcatatttgctaaacaacattaattatnnnnnnntgtggttggtccatttctttatttcctcg |
200 |
Q |
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| T |
30841687 |
gtaacctccactttttaaacaatgtaaaacttctacctcatatttgctaaacaacattaattataaaaaaatgtggttggtccatttctttatttcctcg |
30841786 |
T |
|
| Q |
201 |
tactaggggttatt |
214 |
Q |
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|||||| ||||||| |
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| T |
30841787 |
tactagcggttatt |
30841800 |
T |
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