View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_282 (Length: 230)
Name: NF6872A_low_282
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_282 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9230080 - 9229856
Alignment:
| Q |
1 |
tggcggtttcattttgctacgccaactttctaaaagagaag-cgcatcaggaactgctcaaattttcaaagaagatgaacttaagaaagctaccaacaac |
99 |
Q |
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| T |
9230080 |
tggcggtttcattttgctacgccaactttctaaaagagaagacgcatcaggaactactcaaattttcaaagaagatgaacttaagaaagctaccaacaac |
9229981 |
T |
|
| Q |
100 |
tatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataa |
199 |
Q |
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| T |
9229980 |
tatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaattctagcagacaacaggattgttgcaatcaagaagtccaaaataa |
9229881 |
T |
|
| Q |
200 |
tggatgccacccaagtagagcaatt |
224 |
Q |
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| T |
9229880 |
tggatgccacccaagtagagcaatt |
9229856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 9171057 - 9170959
Alignment:
| Q |
55 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
153 |
Q |
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| T |
9171057 |
gctcaaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaagga |
9170959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 9179039 - 9178941
Alignment:
| Q |
55 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
153 |
Q |
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| T |
9179039 |
gctcaaatattcacagaagaggaacttaagaaagccaccaaaaactacgatgaaagcttaatcattggcagaggaggttttggtacagtttacaaagga |
9178941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 1816406 - 1816309
Alignment:
| Q |
55 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagg |
152 |
Q |
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| T |
1816406 |
gctcacattttcaaagaaaatgaactaaggaaagctactaacaactttgatgagagcttaatcataggtagaggaggttttggtacagttttcaaagg |
1816309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 9162231 - 9162133
Alignment:
| Q |
55 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
153 |
Q |
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| T |
9162231 |
gctcaaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagcttaatcatcggcagaggaggttttggtacagttttcaaagga |
9162133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 9219140 - 9219039
Alignment:
| Q |
55 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaaggaa |
154 |
Q |
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| T |
9219140 |
gctcaaatattcacggaagaggaacttaagaaagccaccaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaa |
9219041 |
T |
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| Q |
155 |
tt |
156 |
Q |
| |
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|| |
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|
| T |
9219040 |
tt |
9219039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 9156304 - 9156221
Alignment:
| Q |
70 |
gaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
153 |
Q |
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| T |
9156304 |
gaagaggaacttaagaaagccaccaaaaactacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaagga |
9156221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 9200621 - 9200526
Alignment:
| Q |
58 |
caaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
153 |
Q |
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| T |
9200621 |
caaatattcacagaagaggaacttaagaaagccaccaaaaaatacgacgaaagcttaatcatcggtagaggaggttttggtacagtttacaaagga |
9200526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 9118221 - 9118319
Alignment:
| Q |
55 |
gctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagga |
153 |
Q |
| |
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||||| || |||| |||| | |||||||| ||||||||||||| ||| || || || ||||| ||||| ||||||||||||||||| ||| ||||||| |
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| T |
9118221 |
gctcagatattcacagaaaaggaacttaaaaaagctaccaacagctacgacgaaagcttaatcattggaagaggaggtttcggtacaattttcaaagga |
9118319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 1856639 - 1856735
Alignment:
| Q |
56 |
ctcaaattttcaaagaagatgaacttaagaaagctaccaacaactatgaggagagtttaataattggcagaggaggtttcggtacggtttacaaagg |
152 |
Q |
| |
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|||| |||||| ||||| ||||||| | |||||| || ||||| | ||| ||||| ||||| || || | ||||||||| ||||| ||||||||||| |
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| T |
1856639 |
ctcacattttcgaagaaaatgaactaaggaaagccactaacaaatttgatgagagcttaatcataggtaaaggaggttttggtacagtttacaaagg |
1856735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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