View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_285 (Length: 230)
Name: NF6872A_low_285
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_285 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 13464 - 13270
Alignment:
| Q |
17 |
atggtgttttatatctcttgatttgaaagtaaagtgggttgcttgctgctatttatgtcccttgaattttaaaacaggtgcatcatgtgtagagctgagg |
116 |
Q |
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| T |
13464 |
atggtgttttatatctcttgatttgaaagtagagtgggtttcttgctgctatttatttcccttgtatttgaaaacaggtgcatcatgtgtagagctgagg |
13365 |
T |
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| Q |
117 |
cacaccagctttattccagaaaacccatatttgattcacttggttttcaactatttgctgttcttcatgaggaaattgaatcagaggtaattaat |
211 |
Q |
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| T |
13364 |
cacaccagctttattccagaaaacccatatttgattcacttggttttcaactatttgcagttcttcatgaggaaattgaatcagaggtaattaat |
13270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 27336929 - 27336812
Alignment:
| Q |
88 |
aaacaggtgcatcatgtgtagagctgaggcacaccagctttattccagaaaacccatatttgattcacttggttttcaactatttgctgttcttcatgag |
187 |
Q |
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| T |
27336929 |
aaacaggtgcatcatgtgcagagcagaggcacacaagctcttctccaggaaacccatatttgatgcacttggggttcaactatttgttgttgttcatgag |
27336830 |
T |
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| Q |
188 |
gaaattgaatcagaggta |
205 |
Q |
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| T |
27336829 |
cacatagagtcagaggta |
27336812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 205
Target Start/End: Original strand, 29176842 - 29176959
Alignment:
| Q |
88 |
aaacaggtgcatcatgtgtagagctgaggcacaccagctttattccagaaaacccatatttgattcacttggttttcaactatttgctgttcttcatgag |
187 |
Q |
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| T |
29176842 |
aaacaggtgcatcatgtgcagagcagaggcacacaagctcttctccaggaaacccatatttgatgcacttggggttcaactatttgttgttgttcatgag |
29176941 |
T |
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| Q |
188 |
gaaattgaatcagaggta |
205 |
Q |
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| T |
29176942 |
cacatagagtcagaggta |
29176959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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