View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_288 (Length: 230)
Name: NF6872A_low_288
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_288 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7176817 - 7176594
Alignment:
| Q |
1 |
actattatcaagcaaatacatcctatgtttttcaaaacacagacacttattttatagttgctaacaacacttttgaaggactttcaacatgtcaagcttt |
100 |
Q |
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| T |
7176817 |
actattatcaagcaaatacatcctatgtttttcaaaacacagacacttattttatagttgctaacaacacttttgaaggactttcaacatgtcaagcttt |
7176718 |
T |
|
| Q |
101 |
gatgcatgagaatcataatcctggtgatgtatatcctggtagaaaactactcgttcctcttagatgtgcttgtcccacaaagaatcaaactcagaaaaac |
200 |
Q |
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| T |
7176717 |
gatgcatgaaaatcataatcctggtgatgtatatcctggtagaaaactacttgttcctcttagatgtgcttgtcctacaaagaatcaaactcagaaaaac |
7176618 |
T |
|
| Q |
201 |
ataaagtatcttttgagttatttg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
7176617 |
ataaagtatcttttgagttatttg |
7176594 |
T |
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