View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_289 (Length: 230)
Name: NF6872A_low_289
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_289 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 19506320 - 19506528
Alignment:
| Q |
18 |
taacataactaaatgtataattaggcctagacaaaattgatttatacttatgcttgtgttaatttgaagcagatccctgctgatatggtggtgaatgcaa |
117 |
Q |
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| T |
19506320 |
taacataactaaatgtataattaggcctagacaaaattgatttatacttatgcttgtgttaatttgaagcagatccctgctgatatggtggtgaatgcaa |
19506419 |
T |
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| Q |
118 |
tgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcatgtgggctcatctgttgggaatccagtgagatatgagagtctcag |
217 |
Q |
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| T |
19506420 |
tgctagtggccatggtaagtcatgcaaatcaaccttgtgatgatagcatatatcacgtaggttcatctgttgggaatccagtgagatatgagagtctcag |
19506519 |
T |
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| Q |
218 |
agactactg |
226 |
Q |
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| T |
19506520 |
agactactg |
19506528 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 36194326 - 36194258
Alignment:
| Q |
84 |
aagcagatccctgctgatatggtggtgaatgcaatgctagtggccatggtaagtcatgcaaatcaacct |
152 |
Q |
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|||||||| || ||||| |||||||| ||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
36194326 |
aagcagataccagctgacatggtggtcaatgcaatgttagtggctatggtggctcatgcaaatcaacct |
36194258 |
T |
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