View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6872A_low_291 (Length: 230)
Name: NF6872A_low_291
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_291 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] scaffold0945 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 24546483 - 24546260
Alignment:
| Q |
7 |
tttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccat |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24546483 |
tttaacgcccacccaaatcttcattccggtacaagatggtattttttgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccat |
24546384 |
T |
|
| Q |
107 |
gctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacaggttgcaccaacgtacaagatgcaccttcttttaatg |
206 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
24546383 |
gctcagtcaaattatttgattgggtttgatttggaaaagcaactggtatctttcaaggcgacagattgcaccaacctacaagatgcaccttctattaatg |
24546284 |
T |
|
| Q |
207 |
gggtgctccccaatgttctttctg |
230 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24546283 |
gggtgctccccaatgttctttctg |
24546260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 24539105 - 24538936
Alignment:
| Q |
8 |
ttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccatg |
107 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| || ||||||||| ||| || | |||| | | | ||||||| || |||||||||| ||| |
|
|
| T |
24539105 |
ttaacgcccgctcaaatgttcattccggtacaagatgataatttctgcttcgcagtcttcgacact---aatgaagaatatgtcacttatggaaactatg |
24539009 |
T |
|
| Q |
108 |
ctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacaggttgcaccaa |
180 |
Q |
| |
|
| ||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||| |
|
|
| T |
24539008 |
cccagtcaaactatttgattgggtttgatttggaaaggcaggtggtttctttcaaggcaacagattgcaccaa |
24538936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 394 - 583
Alignment:
| Q |
7 |
tttaacgcccactcaaatcttcattccggtacaagatggtattttctgctttgcattcaccagcacttttagtaacgaatatggcatttatggaaaccat |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | || |
|
|
| T |
394 |
tttaacgccaactcaaatcttcattccggtacaatatggtattttctgctttgcattcaccagctcttttagtaacgaatatggcacttatggaagctat |
493 |
T |
|
| Q |
107 |
gctcagtccaattatttgattgggtttgatttggaaaggcaagtggtatctttcaaggcgacaggttgcaccaacgtacaagatgcacct |
196 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
494 |
gtgcagtcaaattatttgattgggtttgatttggaaaagcaagtggtttctttcaaggccacagattgcaccaacttacaagatgcacct |
583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University