View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_293 (Length: 230)
Name: NF6872A_low_293
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_293 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 5172939 - 5173130
Alignment:
| Q |
37 |
ttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttc |
136 |
Q |
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| T |
5172939 |
ttggctaatcactccaatcttcagcatctacatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttc |
5173038 |
T |
|
| Q |
137 |
aattgaagtcactcattcttagaaagtgcaacctaaacaaagacaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
228 |
Q |
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| T |
5173039 |
aattgaagtccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
5173130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 4842586 - 4842395
Alignment:
| Q |
37 |
ttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttc |
136 |
Q |
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| T |
4842586 |
ttggctaatcactccaatcttcagcatctatatatttcatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttc |
4842487 |
T |
|
| Q |
137 |
aattgaagtcactcattcttagaaagtgcaacctaaacaaagacaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
228 |
Q |
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| T |
4842486 |
aattgaagtccctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgata |
4842395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5159987 - 5160213
Alignment:
| Q |
1 |
ggaaattacaagcaatgtacattttcattgactcccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacaca |
100 |
Q |
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| T |
5159987 |
ggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagaca |
5160086 |
T |
|
| Q |
101 |
ttgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaagtgcaacctaaacaaagacaaaggaagtgtcattcctac |
200 |
Q |
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| T |
5160087 |
ttgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctac |
5160186 |
T |
|
| Q |
201 |
ttttctttcttatcaatataatttgat |
227 |
Q |
| |
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|||||||||||||||||| |||||||| |
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| T |
5160187 |
ttttctttcttatcaatacaatttgat |
5160213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4857096 - 4856870
Alignment:
| Q |
1 |
ggaaattacaagcaatgtacattttcattgactcccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacaca |
100 |
Q |
| |
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| T |
4857096 |
ggaaattacatgcaaggatcattttcattgaccactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctca |
4857000 |
T |
|
| Q |
101 |
ttgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaagtgcaacctaaacaaagacaaaggaagtgtcattcctac |
200 |
Q |
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||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| |
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| T |
4856999 |
ttgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattcctac |
4856900 |
T |
|
| Q |
201 |
ttttctttcttatcaatataatttgatatt |
230 |
Q |
| |
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| T |
4856899 |
ttttctttcatatcaatataatttggtatt |
4856870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5182235 - 5182461
Alignment:
| Q |
1 |
ggaaattacaagcaatgtacattttcattgactcccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacaca |
100 |
Q |
| |
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|||||||||| |||| | |||||||||||| | |||||||||||||| |||||||| |||||||||||||||||| | || ||| ||||| | || |
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| T |
5182235 |
ggaaattacatgcaaggatcattttcattgagcactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctca |
5182331 |
T |
|
| Q |
101 |
ttgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaagtgcaacctaaacaaagacaaaggaagtgtcattcctac |
200 |
Q |
| |
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||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| || |||||| ||||||||||||| |
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| T |
5182332 |
ttgaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcattcctac |
5182431 |
T |
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| Q |
201 |
ttttctttcttatcaatataatttgatatt |
230 |
Q |
| |
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| T |
5182432 |
ttttctttcatatcaatataatttgatatt |
5182461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5195629 - 5195853
Alignment:
| Q |
1 |
ggaaattacaagcaatgtacattttcattgactcccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacaca |
100 |
Q |
| |
|
|||||||||| |||| | |||||||||||| | ||||||||||| ||||||||| | ||||||||||||| | || || | || |||||| ||| |
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| T |
5195629 |
ggaaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagaca |
5195728 |
T |
|
| Q |
101 |
ttgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaagtgcaacctaaacaaagacaaaggaagtgtcattcctac |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||| ||||||||||||||||||| |
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| T |
5195729 |
ttgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcattcctac |
5195828 |
T |
|
| Q |
201 |
ttttctttcttatcaatataatttg |
225 |
Q |
| |
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||||||||| ||||||||||||||| |
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| T |
5195829 |
ttttctttcatatcaatataatttg |
5195853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5213795 - 5214021
Alignment:
| Q |
1 |
ggaaattacaagcaatgtacattttcattgactcccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacaca |
100 |
Q |
| |
|
|||||||||| |||| | |||||||||||| | |||||||||||||||||||| || ||||||||||||||| | |||| || | || | | ||| |
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|
| T |
5213795 |
ggaaattacatgcaaggatcattttcattgagcactttggctaatcactccaatctccagcatctatatatttcatc--acaa-agcattggtgcaaaca |
5213891 |
T |
|
| Q |
101 |
ttgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaagtgcaacctaaacaaagacaaaggaagtgtcattcctac |
200 |
Q |
| |
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||||||||||||| ||||| ||||| || ||||||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |
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| T |
5213892 |
ttgaaactgaaaagacaaagtggttacccaaatttcaattgaagacactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattcctac |
5213991 |
T |
|
| Q |
201 |
ttttctttcttatcaatataatttgatatt |
230 |
Q |
| |
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||||||||| |||||||||| ||||||||| |
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| T |
5213992 |
ttttctttcatatcaatatagtttgatatt |
5214021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 7142257 - 7142390
Alignment:
| Q |
91 |
ggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaagtgcaacctaaacaaagacaaaggaagtg |
190 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||| ||||||| | | |||| | | ||| ||| ||||||| ||||| |||||||||| || |
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| T |
7142257 |
ggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacactta-tgttaaaaattgcaaccaaaacatggacaaaggaaatg |
7142355 |
T |
|
| Q |
191 |
tcattcctacttttctttcttatcaatataatttg |
225 |
Q |
| |
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||||||||| |||| |||| |||||| |||||||| |
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|
| T |
7142356 |
tcattcctagttttttttcatatcaacataatttg |
7142390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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