View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_294 (Length: 229)

Name: NF6872A_low_294
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_294
NF6872A_low_294
[»] chr2 (3 HSPs)
chr2 (9-209)||(2803204-2803404)
chr2 (19-93)||(33561499-33561573)
chr2 (21-93)||(30312825-30312897)
[»] chr5 (1 HSPs)
chr5 (9-123)||(10351209-10351325)
[»] chr4 (2 HSPs)
chr4 (40-118)||(42480533-42480611)
chr4 (9-85)||(23630348-23630424)
[»] chr6 (2 HSPs)
chr6 (16-93)||(8481962-8482039)
chr6 (52-93)||(27226675-27226716)
[»] chr3 (2 HSPs)
chr3 (52-93)||(260805-260846)
chr3 (41-118)||(32930698-32930775)
[»] chr1 (1 HSPs)
chr1 (21-93)||(1188638-1188710)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 2803204 - 2803404
Alignment:
Q  9 tgagatggacatcacacttttacccaaagcgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtga 108  Q
    |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2803204 tgagttggacatcacacttttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtga 2803303  T
Q  109 gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803304 gacttttaacctacaattgttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaa 2803403  T
Q  209 a 209  Q
    |    
T  2803404 a 2803404  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 33561499 - 33561573
Alignment:
Q  19 atcacacttttacccaaagcgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 93  Q
    |||||||| ||||||||| | |||||||| |||||||||||||| ||||  ||||| | |||| |||||||||||    
T  33561499 atcacactcttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt 33561573  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 30312897 - 30312825
Alignment:
Q  21 cacacttttacccaaagcgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 93  Q
    |||||||||||||||| | |||||  | | ||||||||||||||||   ||||| | ||||||||||||||||    
T  30312897 cacacttttacccaaaaccttaaggaaataagtttatgggtcatctaagttataaagtgttcaacctccactt 30312825  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 10351209 - 10351325
Alignment:
Q  9 tgagatggacatcacacttttacccaaagcg--ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgt 106  Q
    |||||| |||||||||||||||||||||     |||||||| |||||||||||||||| ||   |||| |||||||||||||| ||| ||||   |||||    
T  10351209 tgagatagacatcacacttttacccaaaaatatttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaatgt 10351308  T
Q  107 gagacttttaacctaca 123  Q
    ||||||| |||| ||||    
T  10351309 gagacttctaacttaca 10351325  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 42480611 - 42480533
Alignment:
Q  40 ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 118  Q
    ||||||||| |||||||||| |||||||  ||| | | |||||||||||||||| || ||||| | |||||||||||||    
T  42480611 ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagacttttaac 42480533  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 23630424 - 23630348
Alignment:
Q  9 tgagatggacatcacacttttacccaaagcgttaagacattgagtttatgggtcatctcttttatagaatgttcaac 85  Q
    ||||| ||| |||||||||||||||||||  ||||||| ||||||||||| ||| ||||  ||||| | ||||||||    
T  23630424 tgagagggaaatcacacttttacccaaagtcttaagacgttgagtttatgagtcgtctcacttataaagtgttcaac 23630348  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 8482039 - 8481962
Alignment:
Q  16 gacatcacacttttacccaaagcgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 93  Q
    |||| |||||| |||||||||   ||||| || |||||||||| |||||||| |||||| | ||||||||||||||||    
T  8482039 gacaccacactcttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt 8481962  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 27226675 - 27226716
Alignment:
Q  52 gtttatgggtcatctcttttatagaatgttcaacctccactt 93  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  27226675 gtttatgggtcatctcatttataaaatgatcaacctccactt 27226716  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 260805 - 260846
Alignment:
Q  52 gtttatgggtcatctcttttatagaatgttcaacctccactt 93  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  260805 gtttatgggtcatctcatttataaaatgatcaacctccactt 260846  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 32930775 - 32930698
Alignment:
Q  41 taagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 118  Q
    |||||||||||||||||| ||||||||  ||||| |||||||||| || |||| | |||| ||| | |||||| ||||    
T  32930775 taagacattgagtttatgagtcatctcacttataaaatgttcaacttctacttttctaaacaatataagacttctaac 32930698  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 1188638 - 1188710
Alignment:
Q  21 cacacttttacccaaagcgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 93  Q
    |||||||||||||||| | ||||  || |||||||||| ||| ||||  ||||| ||| ||||||||||||||    
T  1188638 cacacttttacccaaaaccttaaagcaatgagtttatgagtcttctcacttataaaatattcaacctccactt 1188710  T

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