View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_297 (Length: 229)
Name: NF6872A_low_297
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_297 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35742891 - 35743114
Alignment:
| Q |
1 |
ttagacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgat |
100 |
Q |
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| T |
35742891 |
ttagacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgat |
35742990 |
T |
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| Q |
101 |
cctcttgatcggaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattacgatatgacttcaaaataccgatgcaacacaagaaat |
200 |
Q |
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| T |
35742991 |
cctcttgatcggaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattacgatctgacttcaaaatactgatgcaacacaagaaat |
35743090 |
T |
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| Q |
201 |
atcagaagagtcaatgcaaaatct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
35743091 |
atcagaagagtcaatgcaaaatct |
35743114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 35749256 - 35749425
Alignment:
| Q |
4 |
gacaaaatactagtcccaactaggtctttgatgtccaagtgtgacaggatgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgat--- |
100 |
Q |
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| T |
35749256 |
gacaaaatactagtcctaactaggtctttgatgtacaagcgtgctaggatatcatcaataacattacatggtaagtcactgattcgatcaatgtgatcat |
35749355 |
T |
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| Q |
101 |
-------cctcttgatcggaaagagtcataagtgaactacaaattcaagcaagcagaagtgtaaatattac |
164 |
Q |
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| T |
35749356 |
gattggccttcttg-ttagacagagtcataaggtaactacaaattcaagcaagcacaagtgtaaatattac |
35749425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 35739703 - 35739741
Alignment:
| Q |
49 |
aggatgccgtcaatgacattgcatggtaagtcactgatt |
87 |
Q |
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| T |
35739703 |
aggatgccgtcaatggcattgcatggtaagtcactgatt |
35739741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 3681 - 3733
Alignment:
| Q |
49 |
aggatgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgatc |
101 |
Q |
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| T |
3681 |
aggatgccatcaatgacattacatggtaagtcactgattcgatcaatgtgatc |
3733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 40011231 - 40011283
Alignment:
| Q |
49 |
aggatgccgtcaatgacattgcatggtaagtcactgattcgatcaatttgatc |
101 |
Q |
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| T |
40011231 |
aggatgccatcgatgacattacttggtaagtcactgattcgatcaatgtgatc |
40011283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 10862327 - 10862282
Alignment:
| Q |
49 |
aggatgccgtcaatgacattgcatggtaagtcactgattcgatcaa |
94 |
Q |
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| T |
10862327 |
aggatgccatcaatgacattacatggtaagtcactaattcaatcaa |
10862282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 145
Target Start/End: Complemental strand, 16865311 - 16865281
Alignment:
| Q |
115 |
agagtcataagtgaactacaaattcaagcaa |
145 |
Q |
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| T |
16865311 |
agagtcataagtgaactacaaattcaagcaa |
16865281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 16865386 - 16865344
Alignment:
| Q |
52 |
atgccgtcaatgacattgcatggtaagtcactgattcgatcaa |
94 |
Q |
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| T |
16865386 |
atgccatcaatgacattacttggtaagtcactgattcgatcaa |
16865344 |
T |
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