View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6872A_low_298 (Length: 229)
Name: NF6872A_low_298
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_298 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44952259 - 44952478
Alignment:
| Q |
1 |
tagtcactctactcgatcgatgcccatatatgtgacacaaaaaacaacataggagtgttgcatggtagcttctgacatcgtgaattaagtactgcctatg |
100 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44952259 |
tagtcattctactcgatcgatgtccatatatgtgacacacaaaacaacataggagt--tgcatggtagcttctgacatcgtgaattaagtactgcctatg |
44952356 |
T |
|
| Q |
101 |
tcacttaggaattcccctctcattgttctcatgtgatccaacaaatagatccacatctagtgtgtttatgtcccccgcacttaggtttgtcaagatatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |
|
|
| T |
44952357 |
tcacttaggaattcccctctcattgttctcatgtgatccaacaaatagatccacatctagtgtgtttgtgttccccacacttaggtttgtcaagatatga |
44952456 |
T |
|
| Q |
201 |
tgaccacttacacacacatactt |
223 |
Q |
| |
|
|||||| ||| |||||||||||| |
|
|
| T |
44952457 |
tgacca-ttaaacacacatactt |
44952478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University