View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_308 (Length: 227)
Name: NF6872A_low_308
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_308 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9805111 - 9805337
Alignment:
| Q |
1 |
ttcctgctcatcactggtgcttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactag |
100 |
Q |
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| T |
9805111 |
ttcctcctcatcaccagtgcttttcattttgttcaacaagaattccttttccctttgatgcattcctatgtacaaaaatttaatataaaatgtgtactag |
9805210 |
T |
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| Q |
101 |
aagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaaaatcacaatataccttgattctcccttttcgcgagtacatgaaa |
200 |
Q |
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| T |
9805211 |
aagtaaatagaaaataacaaatacaagtacatattttaataaccgaataaaaaaaaaatcacaatataccttgattctcccttttcgcgagtacatgaaa |
9805310 |
T |
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| Q |
201 |
taccttccatcttatcctgttcaatga |
227 |
Q |
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| T |
9805311 |
taccttccatcttgtcctgttcaatga |
9805337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 9818038 - 9818211
Alignment:
| Q |
1 |
ttcctgctcatcactggtgcttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactag |
100 |
Q |
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| T |
9818038 |
ttcctcctcatcactagtgcttttcattttgttcaacaagaattccttttccctttgatgcattcttgtgtacaaaaatttaatataaattgtgtactag |
9818137 |
T |
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| Q |
101 |
aagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaa--aaatcacaatatacctt |
172 |
Q |
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| T |
9818138 |
aagtaaatagaaaataacaaatacaagtacataatttaataaccgtataaaaaaaataaatcacaatatacctt |
9818211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 67 - 227
Target Start/End: Complemental strand, 9806621 - 9806459
Alignment:
| Q |
67 |
tgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataacaaatacaagtacatattttaataaccgaataaaacaaa--aatcacaa |
164 |
Q |
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| T |
9806621 |
tgtgtacaaaaattaaatataaaatgtgtattagaaacaaatagaaaataacaaacacaagtacatatttgaataaccaactaaaataaataaatcacaa |
9806522 |
T |
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| Q |
165 |
tataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcctgttcaatga |
227 |
Q |
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| T |
9806521 |
tataccttgattctcccttttcgtgagcacgtgaaataccttccatcttgtcttgttcaatga |
9806459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 9806653 - 9806621
Alignment:
| Q |
23 |
ttcattttgttcaacaagaattccttttccctt |
55 |
Q |
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| T |
9806653 |
ttcattttgttcaacaataattccttttccctt |
9806621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 12071 - 12278
Alignment:
| Q |
20 |
cttttcattttgttcaacaagaattccttttccctttgatgcatttatgtgtacaaaaatttaagataaaatgtgtactagaagtaaatagcaaataaca |
119 |
Q |
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| T |
12071 |
cttttcattttgttcaacaagaattccttctcccttcgctgcattatcgtgtaccaaaatttaatataaaatg-gtactagaagtaaatataaaataaca |
12169 |
T |
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| Q |
120 |
aatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaataccttccatcttatcct |
218 |
Q |
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| T |
12170 |
aacataagtacataattgaataaccaactaaaaaaataaatcacaaaatacgttgattcccccttttcatgagtacatggaataccttccatcttgtcat |
12269 |
T |
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| Q |
219 |
gttcaatga |
227 |
Q |
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| T |
12270 |
gatcaatga |
12278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 2371052 - 2371144
Alignment:
| Q |
115 |
taacaaatacaagtacatattttaataaccgaataaaacaa-aaatcacaatataccttgattctcccttttcgcgagtacatgaaatacctt |
206 |
Q |
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| T |
2371052 |
taacaaacataagtatatatttgaataatcgactaaaaaaataaatcacaatataccttgattctcctttttcacgagtacatggaatacctt |
2371144 |
T |
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