View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_311 (Length: 226)
Name: NF6872A_low_311
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_311 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 30935510 - 30935706
Alignment:
| Q |
26 |
ggctgattagaatttcaatatttctatgtatgtttacttgagttttatcaagtcnnnnnnnattgtcttaaactattgtttccaagagaatgatgtcttg |
125 |
Q |
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| T |
30935510 |
ggctgattagaatttcaatatttctatgtatgtttacttgagttttatcaagtctttttttattgtcttaaactattgtttccaagagaatgatgtcttg |
30935609 |
T |
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| Q |
126 |
gtaattcagagttcaattaggagttaagtaaagtctaactaaagattaatttaattaacctgaattcgaattcagctctcaaactattcgttcttaactg |
225 |
Q |
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| T |
30935610 |
gtaattcagagttcgattaggagttaagtaaagtctaactaaagattaat----ttaaccagaattcgaattcagctctcaaactattcgttcttaactg |
30935705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 30966039 - 30966107
Alignment:
| Q |
111 |
gagaatgatgtcttggtaattcagagttcaattaggagttaagtaaagtctaactaaagattaatttaa |
179 |
Q |
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| T |
30966039 |
gagaatgatgtcttggtaattcagagttcgatgaggagttaattaaagtctaaccagtgattaatttaa |
30966107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 30965621 - 30965668
Alignment:
| Q |
26 |
ggctgattagaatttcaatatttctatgtatgtttacttgagttttat |
73 |
Q |
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| T |
30965621 |
ggctgattagaattccaatttttctatgtatgtttacttgtgttttat |
30965668 |
T |
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