View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_313 (Length: 225)
Name: NF6872A_low_313
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_313 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 9457309 - 9457146
Alignment:
| Q |
53 |
gaaaatcaagattaatcgtaatttataaacattttatctctcccctacacaaaacacaaacttgagatcggtaacaaaatgagtgttgagatttttatta |
152 |
Q |
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| T |
9457309 |
gaaaatcaagattaattgtaatttataaacattttatctctcccctacgcaaaacacaaacttgagatcggtaacaaaatgagtgttgagatttttatta |
9457210 |
T |
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| Q |
153 |
ccgtattccaaaatggctatatgtgatttttattacaatctaatgatcatctataaagtaaaca |
216 |
Q |
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| T |
9457209 |
ccgtattccaaaacggctatatgtgatttttattacaatctaatgatcatctataaagtaaaca |
9457146 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 9458376 - 9458329
Alignment:
| Q |
10 |
aagaatataaacaaaatccaaaaggaactgaaagaggaattgcgaaaa |
57 |
Q |
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| T |
9458376 |
aagaacataaacaaaatccaaaaggaattgaaagaggaattgtgaaaa |
9458329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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