View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_318 (Length: 224)
Name: NF6872A_low_318
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_318 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 1796562 - 1796379
Alignment:
| Q |
20 |
ttactaacctgagaatgtgtgactggaagtaaacaaactgggtttggattctctttgaaaactcactcgcaaatttgtatttgttagcgttgttgttgaa |
119 |
Q |
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| T |
1796562 |
ttactaacctgagaatgtgtgattggaagtaaacaaactgggtttggattctctttgaaaactcactcgcaaatttgtattagttagcgttgttgttgaa |
1796463 |
T |
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| Q |
120 |
aattcttatgcggctttttccgcttctctacgaaagggtttaagggtttacgactgtaacaaaacaattatttttctttttatt |
203 |
Q |
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| T |
1796462 |
aattcttatgcggctttttcctcttctctacgaaagggtttaagggtttacgactgtaacaaaacaattatttttctttttatt |
1796379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 2508900 - 2509006
Alignment:
| Q |
58 |
tgggtttggattctctttgaaaactcactcgcaaatttgtatttgttagcgttgttgttgaaaattcttatgcggctttttccgcttctctacgaaaggg |
157 |
Q |
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|||||||||||||||||||||||||||| | |||||||| || | |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2508900 |
tgggtttggattctctttgaaaactcac----agatttgtatctgctgtcgttgttgttgaaaattcttatgcggctttttcctcttctctacgaaaggg |
2508995 |
T |
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| Q |
158 |
tttaagggttt |
168 |
Q |
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| T |
2508996 |
tttaagggttt |
2509006 |
T |
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