View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_32 (Length: 416)
Name: NF6872A_low_32
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 179 - 410
Target Start/End: Original strand, 45578373 - 45578611
Alignment:
| Q |
179 |
aagatttcgataagcatcgtacgttgattaggtagttagaggatctgtaagtttacacaccgtgtatctcacctacgaggaagctcgctcgtgtctgctg |
278 |
Q |
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| T |
45578373 |
aagatttcgataagcatcgtacgttgattaggtagttagaggatctgtaagtttacacaccgtgtatctcacctacgaggaagctcgctcgtgtctgctg |
45578472 |
T |
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| Q |
279 |
tgtgcttttaactaccat-------tttccactttccactttcataatcactttccacaaacacaaacatagaagaatatggcgttaggtgtaactgctg |
371 |
Q |
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| T |
45578473 |
tgtgcttttaactaccattttccactttccactttccactttcataatcactttccacaaacacaaacatagaagaagatggcgttaggtgtacctgctg |
45578572 |
T |
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| Q |
372 |
ttcccttcacttacgttgctcatcttcttggtattgtcg |
410 |
Q |
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| T |
45578573 |
ttcccttcacttacgttgctcatcttcttggtattgtcg |
45578611 |
T |
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Back To:
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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 40277427 - 40277344
Alignment:
| Q |
94 |
agagataatgagttagattgagtgtagatagactatgttatggtttggtgtgatgatgtaatctaatggacgaaaaaagtggtc |
177 |
Q |
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| T |
40277427 |
agagatgatgagttagattgagtgtggatagactatgatatagtttggtgtgataatctaatcaaatggttgaaaaaagtggtc |
40277344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 34456262 - 34456179
Alignment:
| Q |
94 |
agagataatgagttagattgagtgtagatagactatgttatggtttggtgtgatgatgtaatctaatggacgaaaaaagtggtc |
177 |
Q |
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| T |
34456262 |
agagatgatgagttagattgagtgtggatagactatgatatagcttggtgtgataatctaatcaaatggttgaaaaaagtggtc |
34456179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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