View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_321 (Length: 222)
Name: NF6872A_low_321
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_321 |
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| [»] scaffold0530 (1 HSPs) |
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Alignment Details
Target: scaffold0530 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 8046 - 7861
Alignment:
| Q |
19 |
ataaatggcagggattggatactacaattgttaaggcaacaaactttgatcattcattgccaaaggaaaaacatattcgatgtatatcgtattctttttc |
118 |
Q |
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| T |
8046 |
ataaatggcagggattggatactgcaattgttaaggcaacaaactttgatcatgcattgccaaaggaaaaacatattcgatgtatatcgtattctttttc |
7947 |
T |
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| Q |
119 |
ttttattcaatgcaatgcaattgatccttagttacaagctttgttggagaatgtatgtgaagagtataaagattgtatgttgatgt |
204 |
Q |
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| T |
7946 |
ttttattcaatgcaatgcaattgatccttagttacaagctttgttggagaatgtatgtgaagagtataaagattgtatgttgatgt |
7861 |
T |
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