View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_322 (Length: 221)
Name: NF6872A_low_322
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_322 |
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| [»] scaffold1583 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold1583 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: scaffold1583
Description:
Target: scaffold1583; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 916 - 699
Alignment:
| Q |
1 |
ggagaagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttcatcttctgaagtgtttggttgttgttgagttagaagag |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
916 |
ggagaagcttgaaacaagggtttactaatcatgtctagaggcatgatgtttagtggtggttcatcttctggagtgtttggttggtgttgagttagaagag |
817 |
T |
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| Q |
101 |
gatacagagatggctttaatggcggcggtgagagtggtggagattttggagatggtggtcttttgtttaggtcaggtggagtaggtggtggaggacgaga |
200 |
Q |
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| T |
816 |
gagacagagatgaatctgatggcggcggtgagagtggtggcgagtttggagatggtggtgttttgtttaggtctggtggagaaggtggtggaggaggaga |
717 |
T |
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| Q |
201 |
aggtgaccacggtgaagg |
218 |
Q |
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| T |
716 |
aggtgaccatggtgaagg |
699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 12921872 - 12921656
Alignment:
| Q |
2 |
gagaagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttcatcttctgaagtgtttggttgttgttgagttagaagagg |
101 |
Q |
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| T |
12921872 |
gagaagcttgaaacaagggtttattaatcatgtctagaggcatgatgtttaatggtggttcatcttctggagagtttggttgttgttgagttagaagagg |
12921773 |
T |
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| Q |
102 |
atacagagatggctttaatggcggcggtgagagtggtggagattttggagatggtggtcttttgtttaggtcaggtggagtaggtggtggaggacgagaa |
201 |
Q |
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| T |
12921772 |
agacagagatgtctctgatggcggtggtgagagtggtggagagtttgaaaatggtggtgttttgtttaggtcaggtggagaaggtggtggaggaggagaa |
12921673 |
T |
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| Q |
202 |
ggtgaccacggtgaagg |
218 |
Q |
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| T |
12921672 |
ggtgaccacggtgaagg |
12921656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 14275771 - 14275988
Alignment:
| Q |
1 |
ggagaagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttcatcttctgaagtgtttggttgttgttgagttagaagag |
100 |
Q |
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| T |
14275771 |
ggagaagcttgaaacaagggtttactaatcatgtctagaggcatgatgtttagtggtggttcatcttctggagtgtttggttggtgttgagttagaagag |
14275870 |
T |
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| Q |
101 |
gatacagagatggctttaatggcggcggtgagagtggtggagattttggagatggtggtcttttgtttaggtcaggtggagtaggtggtggaggacgaga |
200 |
Q |
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| T |
14275871 |
gagacagagatgaatctgatggcggcggtgagagtggtggagagtttggagatggcggtgttttgtttaggtcaggtggagaaggtggtggaggaggaga |
14275970 |
T |
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| Q |
201 |
aggtgaccacggtgaagg |
218 |
Q |
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| T |
14275971 |
cagtgaccatggtgaagg |
14275988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14638493 - 14638713
Alignment:
| Q |
1 |
ggagaagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttcatcttctgaagtgtttggttgttgttgagttagaagag |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14638493 |
ggagaagcttgaaacaagggtttactaatcatgtctagaggcatgatgtttagtggtggttcatcttctggagtgtttggttgttgttgagttagaagag |
14638592 |
T |
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| Q |
101 |
gatacagagatggctttaatggcggcggtgagagtggtggagattttggagatggtggtcttttgtttaggtcaggtggagtaggtggtggaggacgaga |
200 |
Q |
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| T |
14638593 |
gagacagagatgaatctgatggtggcggtgagagtggtggcgagtttggagatggtggtgttttgttcaggtctggtggagaaggtggtggaggaggaga |
14638692 |
T |
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| Q |
201 |
aggtgaccacggtgaaggtgg |
221 |
Q |
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| T |
14638693 |
atgtgaccgtggtgaaggtgg |
14638713 |
T |
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