View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_324 (Length: 220)
Name: NF6872A_low_324
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_324 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 6137248 - 6137467
Alignment:
| Q |
1 |
ttgaaaagagtaagatgatgtgattgtgatattaagaggtcaaacacgtaagtattaccttaatttctttactgcgagatgattctacatcaaaacctcc |
100 |
Q |
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| T |
6137248 |
ttgaaaagagtaagatgatgtgattgtgatattaagaggtcaaacacgtaagtattaccttaatttctttactgcgagacgattctacatcagaacctcc |
6137347 |
T |
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| Q |
101 |
tccagtataatcctccaccttctcgaattgttcttgtttaaaggatgaagtttcagtttcctctccagacttcgtagaactctcatgaacaatcttaagt |
200 |
Q |
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| T |
6137348 |
tccagtataatcctccaccttctcaaattgttcttgtttaaaggatgaagtttcagtttcctctccagacttcgtagaactctcatgaacaatcttaagt |
6137447 |
T |
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| Q |
201 |
ttcatcatttctttggaatt |
220 |
Q |
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| T |
6137448 |
ttcatcatttctttggaatt |
6137467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 6175441 - 6175577
Alignment:
| Q |
84 |
tctacatcaaaacctcctccagtataatcctccaccttctcgaattgttcttgtttaaaggatgaagtttcagtttcctctccagacttcgtagaactct |
183 |
Q |
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| T |
6175441 |
tctacatcagaatctcctccagtagaatccttctccttctcgaattgttcatgtttgttggaagaagtttcagtttcatctccagacttcgcagaactct |
6175540 |
T |
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| Q |
184 |
catgaacaatcttaagtttcatcatttctttggaatt |
220 |
Q |
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| T |
6175541 |
catgaacaatcttaaatttcataatttctttggaatt |
6175577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 6185279 - 6185441
Alignment:
| Q |
55 |
ttaccttaatttctttactgcgagatgattctacatcaaaacctcctccagtataatcctccaccttctcgaattgttcttgtttaaaggatgaagtttc |
154 |
Q |
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| T |
6185279 |
ttaccttaattgctttattgaaagacgattctacatcagagcatccttcagaagaa---tcccccttctcaaattgttcttgtttgtgtgaagaagtttc |
6185375 |
T |
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| Q |
155 |
agtttcctctccagacttcgtagaactctcatgaacaatcttaagtttcatcatttctttggaatt |
220 |
Q |
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| T |
6185376 |
ggtttcctctccagacattgtacaattctcataaagaatcttagatttcaccatttgttttgaatt |
6185441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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