View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6872A_low_325 (Length: 220)
Name: NF6872A_low_325
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_325 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 29447875 - 29447716
Alignment:
| Q |
34 |
aaaatatgaaaaccgaagtcatatatatgaacataagtagacttacagattacagaaaagacggacatccttcagtataccgaaaagattacaagacatc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447875 |
aaaatatgaaaaccgaagtcatatatatgaacataagtagacttacagattacagaaaagacggacatccttcagtataccgaaaagattacaagacatc |
29447776 |
T |
|
| Q |
134 |
aatgaagcagaactcttcttcgctatacgaagattgcagccattggtgtttgcctggagt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447775 |
aatgaagcagaactcttcttcgctatacgaagattgcagccattggtgtttgcctggagt |
29447716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 14584320 - 14584246
Alignment:
| Q |
57 |
tatatgaacataagtagacttacagattacagaaaagacggacatccttcagtataccgaaaagattacaagaca |
131 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| ||||| ||| ||||| ||| || ||||||||| |
|
|
| T |
14584320 |
tatatgaacataagtaggatgacagattacagaaaagacgcccatccatcaatatacagaatggaatacaagaca |
14584246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University