View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6872A_low_330 (Length: 218)
Name: NF6872A_low_330
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_330 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 17701111 - 17700923
Alignment:
| Q |
22 |
aaaattagttgtgttttttcttcttctcttcacaaccgtgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtatttt |
121 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17701111 |
aaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatg---ggaaaccgaagaaccatacatgtgatgtttgtaacaaggtatttt |
17701015 |
T |
|
| Q |
122 |
catccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaatct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17701014 |
tatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaatct |
17700923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 17662968 - 17663156
Alignment:
| Q |
22 |
aaaattagttgtgttttttcttcttctcttcacaaccgtgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtatttt |
121 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
17662968 |
aaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatt---ggaaaccgaagaaccatacaagtgatgtttgtcacaaggtatttt |
17663064 |
T |
|
| Q |
122 |
catccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaatct |
213 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||| |
|
|
| T |
17663065 |
catccaacactgctttgaagggacatatgagatggcatactccaaagggtttgaagaaggatactattattccctcactgactgccccatct |
17663156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 21900125 - 21899949
Alignment:
| Q |
34 |
gttttttcttcttctcttcacaaccgtgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccaacaatg |
133 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
21900125 |
gttttttcttcttctcttcacaatcataatcatgatgatt---ggaaactgaagaaccatacatgtgatgtttgtaacaaggttttttcgtccaacaatg |
21900029 |
T |
|
| Q |
134 |
ctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaatct |
213 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||||| |||||| ||| ||||| ||| |||||||||||| |||| |
|
|
| T |
21900028 |
ctttgaacgggcatatgagatggcatactcaaaagggttcgaagaatggtgttattaaccacccaccgactgccccatct |
21899949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 38227637 - 38227577
Alignment:
| Q |
95 |
catgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatg |
155 |
Q |
| |
|
||||||||||||| |||||||| ||| | || ||||| || ||||| |||||||||||||| |
|
|
| T |
38227637 |
catgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgagatg |
38227577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University