View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_340 (Length: 214)

Name: NF6872A_low_340
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_340
NF6872A_low_340
[»] chr5 (5 HSPs)
chr5 (18-160)||(36320469-36320607)
chr5 (13-63)||(36326864-36326914)
chr5 (48-92)||(36326929-36326973)
chr5 (66-114)||(36304639-36304687)
chr5 (14-51)||(36328000-36328036)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 36320469 - 36320607
Alignment:
Q  18 ataacacaacttggttttcatccttgttacaacactgcattcagatgccattacattaatatcatgccattaattggatatatataaattaaaatataga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    ||||||||||| |||||||    
T  36320469 ataacacaacttggttttcatccttgttacaacactgcattcagatgccattacattaatatcatgccattacttgg----atataaattaacatataga 36320564  T
Q  118 gcaacttgcacttacctcccttgaggttttattataaatcatt 160  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||    
T  36320565 gcaaattgcacttacctcccttgaggttttattaaaaaacatt 36320607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 36326864 - 36326914
Alignment:
Q  13 cagagataacacaacttggttttcatccttgttacaacactgcattcagat 63  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  36326864 cagagataacacaacttggttttcaaccttgttacaacactgcagtcagat 36326914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 36326929 - 36326973
Alignment:
Q  48 aacactgcattcagatgccattacattaatatcatgccattaatt 92  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  36326929 aacactgcagtcagatgccattacattaatatcatgccattaatt 36326973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 36304639 - 36304687
Alignment:
Q  66 cattacattaatatcatgccattaattggatatatataaattaaaatat 114  Q
    |||||||||||||||||||||||||||   || ||||||||||||||||    
T  36304639 cattacattaatatcatgccattaattacttagatataaattaaaatat 36304687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 36328000 - 36328036
Alignment:
Q  14 agagataacacaacttggttttcatccttgttacaaca 51  Q
    |||||||| |||||||||||||||||||||||||||||    
T  36328000 agagataa-acaacttggttttcatccttgttacaaca 36328036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University