View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_342 (Length: 213)
Name: NF6872A_low_342
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_342 |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 4876680 - 4876581
Alignment:
| Q |
96 |
attgaagcaaatttgactctctagcggtataaatgctgcgttgtatagcattaacactcatcattcattaattatattcctaatgaagcaaacaatgatg |
195 |
Q |
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| T |
4876680 |
attgaagcaaatttgactctctagcggtataaatgctgcgttgtatagcattaacactgatcattcattaattatattcctaatgaagcaaacaatgatg |
4876581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 4680191 - 4680243
Alignment:
| Q |
137 |
tgtatagcattaacactcatcattcattaat--tatattcctaatgaagcaaa |
187 |
Q |
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| T |
4680191 |
tgtatagcattagcactcatcattcattaattgtatattcctaatgaagcaaa |
4680243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 10445377 - 10445450
Alignment:
| Q |
122 |
gtataaatgctgcgttgtatagcattaacactcatcattcattaattatattcctaatgaagcaaacaatgatg |
195 |
Q |
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| T |
10445377 |
gtataaatgcttccttgtatagaattaacacttatcagtccataattgtatccctaatgaaacaaacaatgatg |
10445450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 4926546 - 4926466
Alignment:
| Q |
111 |
actctctagcggtataaatgctgcgttgtatagcattaacactcatcattcattaattatattcctaatgaagcaaacaat |
191 |
Q |
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| T |
4926546 |
actctctagcagtatatatgcttccttgcatagtattagtattcatcattcataaattgtatccctaatgaagcaaacaat |
4926466 |
T |
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