View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_346 (Length: 208)
Name: NF6872A_low_346
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_346 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 29664078 - 29664248
Alignment:
| Q |
16 |
atgtcaattagaaatctcataaaatcaactttgatttttaactagtgtttaagaaaactaaaattaataccatctggtttggggtttttgtaactgtcac |
115 |
Q |
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| T |
29664078 |
atgtcaattagaaatctcataaaatcaactttgatttttaactagtgtttaagaaaactaaaattaataccatctggtttggggtttttgtaactgtcac |
29664177 |
T |
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| Q |
116 |
actcctacacgcccttcgtcacctcatcaccaaaatatgtctcaacactggtctgattattgatagatttaaa |
188 |
Q |
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| T |
29664178 |
actcctacactcccttcttcacctcatcaccaaa--atgtctcaacactggtctgattattgatagatttaaa |
29664248 |
T |
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