View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_348 (Length: 206)
Name: NF6872A_low_348
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_348 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 33120118 - 33119951
Alignment:
| Q |
21 |
aacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaaca |
120 |
Q |
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| T |
33120118 |
aacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagagttgataacccatggaacc |
33120019 |
T |
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| Q |
121 |
gttcccattcctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccatcctatatt |
188 |
Q |
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| T |
33120018 |
gttcccattcctggtgaaaagaatattatgtagactgctaaaccaactatcgccaaccatcctatatt |
33119951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 33116906 - 33116784
Alignment:
| Q |
21 |
aacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaaca |
120 |
Q |
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| T |
33116906 |
aacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaaca |
33116807 |
T |
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| Q |
121 |
gttcccattcctggtgaaaagaa |
143 |
Q |
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| T |
33116806 |
gtccccattccaggtgaaaagaa |
33116784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 21491899 - 21492025
Alignment:
| Q |
28 |
aggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttccca |
127 |
Q |
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| T |
21491899 |
aggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaacccatggaactgttccca |
21491998 |
T |
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| Q |
128 |
ttcctggtgaaaagaatattatgtaga |
154 |
Q |
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| T |
21491999 |
ttccaggcgagaagaatatgatgtaga |
21492025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 21558479 - 21558576
Alignment:
| Q |
48 |
tgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttcccattcctggtgaaaagaata |
145 |
Q |
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| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaata |
21558576 |
T |
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