View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_36 (Length: 407)

Name: NF6872A_low_36
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_36
NF6872A_low_36
[»] chr1 (1 HSPs)
chr1 (18-407)||(36314413-36314805)
[»] chr8 (28 HSPs)
chr8 (66-407)||(19345132-19345458)
chr8 (66-398)||(19503885-19504202)
chr8 (92-407)||(19390546-19390864)
chr8 (63-407)||(19410743-19411072)
chr8 (63-407)||(19457762-19458091)
chr8 (63-407)||(19522987-19523316)
chr8 (66-407)||(19592093-19592416)
chr8 (63-407)||(19469355-19469681)
chr8 (63-407)||(19540279-19540605)
chr8 (241-396)||(19337427-19337582)
chr8 (241-398)||(19355445-19355602)
chr8 (272-407)||(19468610-19468745)
chr8 (272-407)||(19555531-19555666)
chr8 (66-178)||(19337681-19337793)
chr8 (66-165)||(19355714-19355813)
chr8 (66-189)||(19468410-19468533)
chr8 (66-189)||(19555331-19555454)
chr8 (84-189)||(19404923-19405028)
chr8 (86-183)||(19376801-19376898)
chr8 (259-401)||(19172821-19172963)
chr8 (254-407)||(19376580-19376733)
chr8 (259-401)||(19287683-19287825)
chr8 (272-396)||(19404722-19404846)
chr8 (284-396)||(19370934-19371046)
chr8 (92-174)||(19172660-19172742)
chr8 (79-177)||(19287901-19287999)
chr8 (284-396)||(19341154-19341266)
chr8 (108-155)||(19371145-19371192)
[»] chr6 (2 HSPs)
chr6 (93-189)||(19543241-19543337)
chr6 (259-407)||(19543029-19543177)


Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 36314413 - 36314805
Alignment:
Q  18 aaccataaattacattccattcatatgatgatgcattgtccattttgctt---ggtgttcccacctttttctgaaaaacctcaccaggttccctacaagt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  36314413 aaccataaattacattccattcatatgatgatgcattgtccattttgctttttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagt 36314512  T
Q  115 tggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcatcaccactt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36314513 tggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcaacaccactt 36314612  T
Q  215 gttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtact 314  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314613 gttaacttgcccttcgaggatagctcccatcatataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtact 36314712  T
Q  315 gatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgcgttttttga 407  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36314713 gatacatatgttgaacattcactggaatgttctcgaacattccattgcttttaagttttccacttttccaatacactttcccgcgttttttga 36314805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 66 - 407
Target Start/End: Complemental strand, 19345458 - 19345132
Alignment:
Q  66 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 165  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19345458 ttggtgttcccaccattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19345359  T
Q  166 tatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 265  Q
     ||||||||||| ||||| ||||||            |||| |||   |  |||| | || ||||||| ||| | |||||||  ||||||||||||||||    
T  19345358 catatctgcattcccaatatctcca------------tcatgacc---tactaacctcccgttcgaggttagttgccatcgtgcaaacttcccatcttta 19345274  T
Q  266 acttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 365  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||| | |||||||||||||| ||||||||||| |    
T  19345273 acttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatacgttgaactttcgtgggaatgttctcgaatattccattgctat 19345174  T
Q  366 taagttttccacttttccaatacactttgccgcgttttttga 407  Q
    |||||||||| |||||||||||| || |||||| ||| ||||    
T  19345173 taagttttccgcttttccaatacgctatgccgcttttcttga 19345132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 66 - 398
Target Start/End: Original strand, 19503885 - 19504202
Alignment:
Q  66 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 165  Q
    ||||||||||| |  ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19503885 ttggtgttcccgcaattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19503984  T
Q  166 tatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 265  Q
     ||||||||||| ||||| ||||||            |||| |||   |  |||| | |||||||||| ||| | |||||||  ||||||||||||||||    
T  19503985 catatctgcattcccaatctctcca------------tcatgacc---tactaacctccccttcgaggttagttgccatcgtgcaaacttcccatcttta 19504069  T
Q  266 acttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 365  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||  | |||||||||||||| |||||||||||||    
T  19504070 acttcgaaagcgaaagaatcttcattcttgttagagacaataatgtactgatatatacgttgaacttttgtgggaatgttctcgaatattccattgcttt 19504169  T
Q  366 taagttttccacttttccaatacactttgccgc 398  Q
    |||||||||| |||||||||| |||||||||||    
T  19504170 taagttttccgcttttccaatgcactttgccgc 19504202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 92 - 407
Target Start/End: Complemental strand, 19390864 - 19390546
Alignment:
Q  92 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccac 191  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||  |||||||||||||||||  ||||||||||  |||| ||| |||    
T  19390864 acctcacgagggtccctgcaagttggtatatcctcccatttttggcacccggcatcactattatatccataacacttatctgcattagcaatgtctgcac 19390765  T
Q  192 tagcattgtct---tcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttc 288  Q
    ||  | | |||   |||||| ||||| ||||| | ||||||||||  |    |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  19390764 tataaatctctccctcatcagcacttattaacctccccttcgaggtaatgaaccatcgtataaacttcccatctttaacttcgaaagcaaaagaatcttc 19390665  T
Q  289 attcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttccaatac 388  Q
    || ||||||||| ||||||||||| ||||| ||| ||||||||||||  |||||||||||||| |  |||||||||||||||||||| ||||||||||||    
T  19390664 atccttgttagagacaataatgtattgatatatacgttgaacattcaccggaatgttctcgaataaaccattgcttttaagttttccgcttttccaatac 19390565  T
Q  389 actttgccgcgttttttga 407  Q
    |||||||||||||| ||||    
T  19390564 actttgccgcgtttcttga 19390546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 63 - 407
Target Start/End: Complemental strand, 19411072 - 19410743
Alignment:
Q  63 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 162  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19411072 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19410973  T
Q  163 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 262  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19410972 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19410888  T
Q  263 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 362  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19410887 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19410788  T
Q  363 ttttaagttttccacttttccaatacactttgccgcgttttttga 407  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19410787 ttttaagttttccgcttttccaatacactttgccgcttttcttga 19410743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 63 - 407
Target Start/End: Complemental strand, 19458091 - 19457762
Alignment:
Q  63 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 162  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19458091 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19457992  T
Q  163 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 262  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19457991 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19457907  T
Q  263 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 362  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19457906 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19457807  T
Q  363 ttttaagttttccacttttccaatacactttgccgcgttttttga 407  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19457806 ttttaagttttccgcttttccaatacactttgccgcttttcttga 19457762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 63 - 407
Target Start/End: Original strand, 19522987 - 19523316
Alignment:
Q  63 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 162  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19522987 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19523086  T
Q  163 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 262  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||||| |||||||||||||| |||||| ||  |||||||||||||    
T  19523087 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacttccccttcgaggatagttcccattgtgcaaacttcccatct 19523171  T
Q  263 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 362  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||  |||||||||    ||||| |||||||| | ||||||||    
T  19523172 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctactttgaacattggccggaatattctcgaataatccattgc 19523271  T
Q  363 ttttaagttttccacttttccaatacactttgccgcgttttttga 407  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19523272 ttttaagttttccgcttttccaatacactttgccgcttttcttga 19523316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 66 - 407
Target Start/End: Complemental strand, 19592416 - 19592093
Alignment:
Q  66 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 165  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| |||||    
T  19592416 ttggtgttcccgcctttttctgaaaaacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgtaaca 19592320  T
Q  166 tatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatcttta 265  Q
     |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  ||||||||||||||||    
T  19592319 catatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatcttta 19592235  T
Q  266 acttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttt 365  Q
    ||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| |||||||| | |||||||||||    
T  19592234 acttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgcttt 19592135  T
Q  366 taagttttccacttttccaatacactttgccgcgttttttga 407  Q
    |||||||||| |||||||||||||||||||||| ||| ||||    
T  19592134 taagttttccgcttttccaatacactttgccgcttttcttga 19592093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 63 - 407
Target Start/End: Original strand, 19469355 - 19469681
Alignment:
Q  63 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 162  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| ||    
T  19469355 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgta 19469451  T
Q  163 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 262  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  |||||||||||||    
T  19469452 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatct 19469536  T
Q  263 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 362  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| |||||||| | ||||||||    
T  19469537 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgc 19469636  T
Q  363 ttttaagttttccacttttccaatacactttgccgcgttttttga 407  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19469637 ttttaagttttccgcttttccaatacactttgccgcttttcttga 19469681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 63 - 407
Target Start/End: Original strand, 19540279 - 19540605
Alignment:
Q  63 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 162  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  ||||   |||| ||    
T  19540279 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccatcactat---atccgta 19540375  T
Q  163 acatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatct 262  Q
    ||| |||||||||||  |||| | ||||            ||||||||   |  |||| | || ||||||  ||| |||||| ||  |||||||||||||    
T  19540376 acacatatctgcattagcaatatatcca------------tcatcacc---tactaacctccctttcgagattagttcccattgtgcaaacttcccatct 19540460  T
Q  263 ttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgc 362  Q
    |||||||| || | |||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||    ||||| |||||||| | ||||||||    
T  19540461 ttaacttcgaacgtgaaagaatcttcatccttgttagagacaataatgtactgatacctattttgaacattggccggaatattctcgaataatccattgc 19540560  T
Q  363 ttttaagttttccacttttccaatacactttgccgcgttttttga 407  Q
    ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19540561 ttttaagttttccgcttttccaatacactttgccgcttttcttga 19540605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 241 - 396
Target Start/End: Complemental strand, 19337582 - 19337427
Alignment:
Q  241 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 340  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| || ||| ||||||| |||   |||    
T  19337582 ccatcgtataaatttcccatctttaacttcaaaagcaaaagaatcttcatccttgttagacacaataatgtactggtatatacgttgaactttcgcagga 19337483  T
Q  341 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgcc 396  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  19337482 atgttctcgaacattccattgcttttgagttttccacttttccaatgcactttgcc 19337427  T

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Target: chr8; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 241 - 398
Target Start/End: Complemental strand, 19355602 - 19355445
Alignment:
Q  241 ccatcgtataaacttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattgga 340  Q
    |||||||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||||| |||||||||||| |||| |||  |||||| |||  ||||    
T  19355602 ccatcgtataaaattcccatcattaacttcgaaagcaaaagaatcttcatccttgttagacacaataatgtaccgatatatactttgaactttcgctgga 19355503  T
Q  341 atgttctcgaacattccattgcttttaagttttccacttttccaatacactttgccgc 398  Q
    ||||||||||| |||||||| ||| |||||||||| |||||||||| |||||||||||    
T  19355502 atgttctcgaatattccattacttctaagttttccgcttttccaatgcactttgccgc 19355445  T

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Target: chr8; HSP #12
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 272 - 407
Target Start/End: Original strand, 19468610 - 19468745
Alignment:
Q  272 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 371  Q
    |||| |||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||| | |||||||||||||||||    
T  19468610 aaagtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagtt 19468709  T
Q  372 ttccacttttccaatacactttgccgcgttttttga 407  Q
    |||| |||||||||||||||||||||| ||| ||||    
T  19468710 ttccgcttttccaatacactttgccgcttttcttga 19468745  T

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Target: chr8; HSP #13
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 272 - 407
Target Start/End: Original strand, 19555531 - 19555666
Alignment:
Q  272 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 371  Q
    |||| |||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||| | |||||||||||||||||    
T  19555531 aaagtgaaagaatcttcgtctttgttagagacaataatgtactgatacatatgttgaacattcaccggaatattctcgaataatccattgcttttaagtt 19555630  T
Q  372 ttccacttttccaatacactttgccgcgttttttga 407  Q
    |||| |||||||||||||||||||||| ||| ||||    
T  19555631 ttccgcttttccaatacactttgccgcttttcttga 19555666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 19337793 - 19337681
Alignment:
Q  66 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 165  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19337793 ttggtcttcccaccattttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19337694  T
Q  166 tatatctgcattt 178  Q
     || |||||||||    
T  19337693 catgtctgcattt 19337681  T

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Target: chr8; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 19355813 - 19355714
Alignment:
Q  66 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 165  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19355813 ttggtcttcccacctttttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19355714  T

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Target: chr8; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 19468410 - 19468533
Alignment:
Q  66 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 165  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19468410 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19468509  T
Q  166 tatatctgcatttccaatttctcc 189  Q
     |||||||||||| |||| |||||    
T  19468510 catatctgcatttacaatatctcc 19468533  T

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Target: chr8; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 66 - 189
Target Start/End: Original strand, 19555331 - 19555454
Alignment:
Q  66 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 165  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19555331 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19555430  T
Q  166 tatatctgcatttccaatttctcc 189  Q
     |||||||||||| |||| |||||    
T  19555431 catatctgcatttacaatatctcc 19555454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 19405028 - 19404923
Alignment:
Q  84 tctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 183  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| |||||||||||||||||    
T  19405028 tctgaaacacctcaccaggttccctacaagttggtatatcctcccacttttggcaccctccgtccctattatatccataacacatatctgcatttccaat 19404929  T
Q  184 ttctcc 189  Q
     |||||    
T  19404928 atctcc 19404923  T

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Target: chr8; HSP #19
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 19376898 - 19376801
Alignment:
Q  86 tgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 183  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  19376898 tgaaacacctcaccaggttccctgcaagctggtatatcctcccatttttggcaccctcgatcactattatatccataacatatatctgcatttccaat 19376801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 259 - 401
Target Start/End: Original strand, 19172821 - 19172963
Alignment:
Q  259 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 358  Q
    |||||| | ||| |||| ||| || ||||||| ||||||||| ||||||||||| ||||||| ||||||||| |||| | ||||||||| ||| | ||||    
T  19172821 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacatgttgaactttcactagaatgttcttgaataatcca 19172920  T
Q  359 ttgcttttaagttttccacttttccaatacactttgccgcgtt 401  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  19172921 ttgctgttaagttttccgcttttccaatacactttgccgcgtt 19172963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 407
Target Start/End: Complemental strand, 19376733 - 19376580
Alignment:
Q  254 ttcccatctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaaca 353  Q
    |||| |||||||| |||||||   || |||||||||| ||||||||| ||||| |||||| ||||||||| |||||||||    ||||| |||||||| |    
T  19376733 ttccgatctttaatttcaaaactaaaggaatcttcatccttgttagagacaatgatgtaccgatacatattttgaacattggccggaatattctcgaata 19376634  T
Q  354 ttccattgcttttaagttttccacttttccaatacactttgccgcgttttttga 407  Q
     ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||    
T  19376633 atccattgcttttaagttttccgcttttccaatacactttgccgcttttcttga 19376580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 259 - 401
Target Start/End: Complemental strand, 19287825 - 19287683
Alignment:
Q  259 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 358  Q
    |||||| | ||| |||| ||| || ||||||| ||||||||| ||||||||||| ||||||| | ||||||| |||| ||||||||||||||| |  |||    
T  19287825 atctttgatttcgaaagtgaaggagtcttcatccttgttagagacaataatgtattgatacacacgttgaactttcactggaatgttctcgaataaacca 19287726  T
Q  359 ttgcttttaagttttccacttttccaatacactttgccgcgtt 401  Q
    |||| | || ||||||| |||||||||||||||||||||||||    
T  19287725 ttgcgtctacgttttccgcttttccaatacactttgccgcgtt 19287683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 272 - 396
Target Start/End: Complemental strand, 19404846 - 19404722
Alignment:
Q  272 aaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagtt 371  Q
    |||| |||||||||||||| ||||||||| |||||| |||| |||||||||  |||||||||    ||||| |||||||| | ||||| |||||||||||    
T  19404846 aaagtgaaagaatcttcatccttgttagagacaatagtgtattgatacatagtttgaacattggccggaatattctcgaataatccatcgcttttaagtt 19404747  T
Q  372 ttccacttttccaatacactttgcc 396  Q
    |||| ||||||||||||||||||||    
T  19404746 ttccgcttttccaatacactttgcc 19404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 19371046 - 19370934
Alignment:
Q  284 tcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttcc 383  Q
    |||||||  |||||||| ||||| |||||  |||||| |||||| ||||||  ||||||||||||||| | |||||||||| ||||||||||||||||||    
T  19371046 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctggaatgttctcgaataatccattgcttctaagttttccacttttcc 19370947  T
Q  384 aatacactttgcc 396  Q
    ||| |||||||||    
T  19370946 aatgcactttgcc 19370934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 19172660 - 19172742
Alignment:
Q  92 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgc 174  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||    
T  19172660 acctcaccgggttccctgcaggttggtatatcctcccatttttggcaccctccatcggtattatagccataacacatatctgc 19172742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 19287999 - 19287901
Alignment:
Q  79 ctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatt 177  Q
    |||||| ||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||   ||||||||||||||||  ||||||||||    
T  19287999 ctttttttgaaagacctcaccacgttccctgcaagttggcatatcctcccatttttggcacccttcatcattattatatccataacacttatctgcatt 19287901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 19341266 - 19341154
Alignment:
Q  284 tcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattccattgcttttaagttttccacttttcc 383  Q
    |||||||  |||||||| ||||| |||||  |||||| |||||| ||||||  | ||||||||||||| | ||||||||||  |||||||||||||||||    
T  19341266 tcttcatctttgttagagacaatcatgtatcgatacacatgttggacattctctagaatgttctcgaataatccattgcttccaagttttccacttttcc 19341167  T
Q  384 aatacactttgcc 396  Q
    ||| |||||||||    
T  19341166 aatgcactttgcc 19341154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 19371192 - 19371145
Alignment:
Q  108 tacaagttggtatatcctcccatttttggcaccctccattgctattat 155  Q
    ||||||||||||||| ||||||||||||||| || ||||| |||||||    
T  19371192 tacaagttggtatatactcccatttttggcatccaccattactattat 19371145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 19543337 - 19543241
Alignment:
Q  93 cctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctcc 189  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||||||| |||||    
T  19543337 cctcaccaggttccctacaacttggtatatcctcccatttttggcaccctccgttgatattatatccataacacaagtctgcatttccaatatctcc 19543241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 259 - 407
Target Start/End: Complemental strand, 19543177 - 19543029
Alignment:
Q  259 atctttaacttcaaaagcgaaagaatcttcattcttgttagaaacaataatgtactgatacatatgttgaacattcattggaatgttctcgaacattcca 358  Q
    |||||||| || |||||  || ||||||||||  || ||||||||||||||||| | ||||| | |||||||||||   || |||||| |||| |  |||    
T  19543177 atctttaattttaaaagtaaaggaatcttcatctttcttagaaacaataatgtattcatacacacgttgaacattcgccggtatgttcacgaataaccca 19543078  T
Q  359 ttgcttttaagttttccacttttccaatacactttgccgcgttttttga 407  Q
    || ||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  19543077 tttcttctaagttttccgcttttccaatacactttgccgcttttcttga 19543029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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