View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_4 (Length: 551)
Name: NF6872A_low_4
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 21 - 530
Target Start/End: Complemental strand, 19190619 - 19190111
Alignment:
| Q |
21 |
atcacgaccatccctaccataccctccaaaactttgctcattaccgtaaccactagaacgccctccatatccatagccaccactagaacggttttcttcg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19190619 |
atcacgaccatccctaccataccctccaaaactttgctcattaccgtaaccactagaacgccctccatatccatagccaccactagaacggttttcttcg |
19190520 |
T |
|
| Q |
121 |
ccatatccaccaatactcgtacgccctccatcaccatatccacccccagaacgcccatatccactctcataacggtcattagcgccataaccaccaccag |
220 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19190519 |
ccatatccaccaatactcgaacgccctccatcaccatatccaccaccagaacgcccatatccactctcataacggtcattagcgccataaccaccaccag |
19190420 |
T |
|
| Q |
221 |
aacggtcatcggaaccataaccaccaccaaaacgtccacctccatacccgctctcgttattattcccataaccaccaccggaacgaccattagaaccata |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19190419 |
aacggtcatcggaaccataaccaccaccaaaacgtccacctccatacccgctctcgttattattcccataaccaccaccggaacgaccattagaaccata |
19190320 |
T |
|
| Q |
321 |
accaccgcccagtagctccaccagaacgtccacctccataaccactgttagatcggttatcaagaccgtaaccaccacctgtagtaccaccaccataacg |
420 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19190319 |
accacc-accagtagctccaccagaacgtccacctccataaccactgttagatcggttatcaagaccgtaaccaccacctgtagtaccaccaccataacg |
19190221 |
T |
|
| Q |
421 |
tccataaccactctcatgatacttattatccttatttccataataaccaccatttccaccaaacccaccaccagaataaccattttttcgtccggtagga |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19190220 |
tccataaccactctcatgatacttattatccttatttccataataaccaccatttccaccaaacccaccaccagaataacccttttttcgtccggtagga |
19190121 |
T |
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| Q |
521 |
acaccggagg |
530 |
Q |
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|||||||||| |
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| T |
19190120 |
acaccggagg |
19190111 |
T |
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