View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_42 (Length: 386)
Name: NF6872A_low_42
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_42 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 381
Target Start/End: Original strand, 14877692 - 14878059
Alignment:
| Q |
9 |
tggtgttgctttgatcaaggtaatttttcttttgcaacatctagtagtgtgtatacatataatcacaccaaacataaccctattcgatacaaagcaaatt |
108 |
Q |
| |
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|||||||||||| ||||||||| |||||||| ||||||||||| |||| || | ||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
14877692 |
tggtgttgctttaatcaaggtattttttcttgcgcaacatctag--gtgtatacatatataatcacaccaaacataaccct---cgataaaaagcaaatt |
14877786 |
T |
|
| Q |
109 |
caacaaaaacatttttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggctggttaatgttgttcttaagaacactatc |
208 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14877787 |
caacaaaaacatatttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttagtaggctggttaatgttgttcttaagaacactatc |
14877886 |
T |
|
| Q |
209 |
caactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagaca |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14877887 |
caactctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaaacctttctctcctttatcatttgtaaatggaatatgaaagaca |
14877986 |
T |
|
| Q |
309 |
gcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14877987 |
gcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa |
14878059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 120 - 381
Target Start/End: Original strand, 14785943 - 14786204
Alignment:
| Q |
120 |
tttttaaaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggctggttaatgttgttcttaagaacactatccaactctttaa |
219 |
Q |
| |
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||||||||||||||||| ||||| ||| || || |||| | ||||| |||| |||||| |||| |||| ||||||| |||||||||| ||||||| |
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| T |
14785943 |
tttttaaaggactacaatgaagaaacaatgataccggattttttatcacacttagtaggcttgttagtgttactcttaagcacactatccatttctttaa |
14786042 |
T |
|
| Q |
220 |
ccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccagg |
319 |
Q |
| |
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| |||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| | ||||| ||||||||| ||| ||||||| |
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| T |
14786043 |
caaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaaaggtatatgaaagctagcaagaccagg |
14786142 |
T |
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| Q |
320 |
aagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa |
381 |
Q |
| |
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|| | ||||||| ||||| |||||||||||||||| | | ||||||||||||| |||||| |
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| T |
14786143 |
aatatcaccatctgctcctctagctggtcctccatagatgggtttcccccaaccataatcaa |
14786204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 14759852 - 14759681
Alignment:
| Q |
210 |
aactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacag |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||| | ||||| |||||||| |||| |
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| T |
14759852 |
aactctttaaccaacctctccatgacttgagcaggcaagaaaaacggtataaccaaaccttcttctcctttagcatttttgaaaggtatatgaaatacag |
14759753 |
T |
|
| Q |
310 |
cttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa |
381 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||| ||||||||| | |||||||||||||||||| |||| |
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| T |
14759752 |
cttgaccaggaatagcaacatcacctcctttagccattcctccatagagagctttcccccaaccaaattcaa |
14759681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 175 - 381
Target Start/End: Original strand, 14766915 - 14767121
Alignment:
| Q |
175 |
taggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctc |
274 |
Q |
| |
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|||| ||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||| |||||| ||| ||||||||||||||||| ||| |
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| T |
14766915 |
taggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctc |
14767014 |
T |
|
| Q |
275 |
tcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaacca |
374 |
Q |
| |
|
||||||| ||||| | ||||| |||| |||| ||| |||||| | ||||||| | ||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
14767015 |
tcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctggtccaccatatacagcttttccccaacca |
14767114 |
T |
|
| Q |
375 |
aaatcaa |
381 |
Q |
| |
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|| |||| |
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| T |
14767115 |
aattcaa |
14767121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 14873113 - 14873217
Alignment:
| Q |
166 |
cacccttactaggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcnnnnnnnctggtataaccaa |
265 |
Q |
| |
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||||| || |||| |||||||| ||||||||||| |||| |||||||||||||| |||||||||||| ||| ||||||| ||||||||||||| |
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| T |
14873113 |
cacccatagtaggttggttaattttgttcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaa |
14873212 |
T |
|
| Q |
266 |
acctt |
270 |
Q |
| |
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||||| |
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| T |
14873213 |
acctt |
14873217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 14873265 - 14873313
Alignment:
| Q |
333 |
cctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa |
381 |
Q |
| |
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|||||||||||||||||||||||| || ||| |||||||| ||||||| |
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| T |
14873265 |
cctcctttagctggtcctccataacaaggttttccccaaccgaaatcaa |
14873313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 126 - 381
Target Start/End: Original strand, 83864 - 84119
Alignment:
| Q |
126 |
aaggactacaacgaagatttaataatgccaaatttgtgatcacccttactaggctggttaatgttgttcttaagaacactatccaactctttaaccaacc |
225 |
Q |
| |
|
||||||||||||||||| ||||| || ||| |||| ||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
83864 |
aaggactacaacgaagaattaatgattccagattttctatcacccatagtaggcgagttaatgttgttcttaagaactttatccaactctttaaccaacc |
83963 |
T |
|
| Q |
226 |
tctccatgacttgagttggcnnnnnnnctggtataaccaaacctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagc |
325 |
Q |
| |
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|||| |||||||||||||| |||||||||| ||||||| |||||||||| ||||| ||||||| |||| || | || ||||||| || |
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| T |
83964 |
tctcgatgacttgagttggaaaaaaaactggtataacaaaaccttcctctcctttagcatttttaaaaggtatataaatggtagaaataccaggattagt |
84063 |
T |
|
| Q |
326 |
accatcccctcctttagctggtcctccataaacagctttcccccaaccaaaatcaa |
381 |
Q |
| |
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|||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
84064 |
accatctcctgctctagctaatcctccataaacagctttcccccaaccaaaatcaa |
84119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 381
Target Start/End: Original strand, 11999596 - 11999711
Alignment:
| Q |
266 |
acctttctctcctttatcatttgtaaaaggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttc |
365 |
Q |
| |
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||||| |||||||||| ||||| |||||| ||| ||||| ||| |||| ||| |||||| || ||||||||||||||||||||||| |||| |||| |
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| T |
11999596 |
accttcctctcctttaacatttttaaaagctatacgaaagcaagcaagaccgggattagcaccgtctcctcctttagctggtcctccatacacaggtttc |
11999695 |
T |
|
| Q |
366 |
ccccaaccaaaatcaa |
381 |
Q |
| |
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||||||||||| |||| |
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| T |
11999696 |
ccccaaccaaactcaa |
11999711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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