View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_46 (Length: 383)

Name: NF6872A_low_46
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_46
NF6872A_low_46
[»] chr4 (4 HSPs)
chr4 (24-352)||(5313554-5313886)
chr4 (119-225)||(16839429-16839535)
chr4 (28-218)||(11355130-11355322)
chr4 (285-337)||(11355384-11355436)
[»] chr1 (2 HSPs)
chr1 (25-227)||(30737674-30737880)
chr1 (137-264)||(28451574-28451701)
[»] chr6 (1 HSPs)
chr6 (119-333)||(7499954-7500168)
[»] chr5 (2 HSPs)
chr5 (119-333)||(9504983-9505197)
chr5 (209-352)||(33050399-33050542)
[»] chr2 (3 HSPs)
chr2 (119-225)||(45495640-45495746)
chr2 (119-225)||(45503382-45503488)
chr2 (128-333)||(5986896-5987101)
[»] scaffold0014 (1 HSPs)
scaffold0014 (119-218)||(62533-62632)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 24 - 352
Target Start/End: Complemental strand, 5313886 - 5313554
Alignment:
Q  24 gaaagttctcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaa-cccttatagcatgtgcttccattttcgtagtaga--catt 120  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |  ||||    
T  5313886 gaaagttttcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaaacccttgtagcatgtgcttccattttcatagtatatacatt 5313787  T
Q  121 ttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgctttcttgccatcttttctatgaatcaat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  5313786 ttgcagcaattggcctgtactaatgagattacttctcatattttgaacatacaatacatcagtgatatatgttttcttgccatcttttctatgaatcaat 5313687  T
Q  221 actttactagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaagact-ttttacat 319  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||| |||||| |    
T  5313686 actttactagttcctttaacacaaactatactattatttgcaaatcttgtctttttactaattgaaccatctaactcagagaaccaagacttttttacct 5313587  T
Q  320 gtcatgtgatttgagcatcgtgtatccagatac 352  Q
    ||||| |||||||||||||||||||||| ||||    
T  5313586 gtcatatgatttgagcatcgtgtatccatatac 5313554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 16839429 - 16839535
Alignment:
Q  119 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgctttcttgccatcttttctatgaatca 218  Q
    |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| || |||||||| ||  | |||||||||||||| ||  |||||||||    
T  16839429 ttttgcagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgccatccttcttatgaatca 16839528  T
Q  219 atacttt 225  Q
     ||||||    
T  16839529 gtacttt 16839535  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 218
Target Start/End: Original strand, 11355130 - 11355322
Alignment:
Q  28 gttctcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaacccttatagcatgtgcttccattttcgtagtaga--cattttgca 125  Q
    ||||| |||||||||||||||||||| |  ||||||||  ||||||  | ||||||| | ||||  ||| | ||||||||| ||||| |  | || ||||    
T  11355130 gttcttttctttgacaatggagcctttagaatcaatcttctcttgctgtcaaaaaccatcatagtttgttcctccattttcatagtatagcctttctgca 11355229  T
Q  126 gcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgctttcttgccatcttttctatgaatca 218  Q
      || || ||||||||||||||||||||  |||| ||||| |||||||| ||| |||||||  | ||||||||||||||||| | ||||||||    
T  11355230 ataactgacctatactaatgagattactcttcatgtttggcacatataacacaccagtaatgcaagctttcttgccatctttcccatgaatca 11355322  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 11355384 - 11355436
Alignment:
Q  285 aatcatctaactcggagaaccaagactttttacatgtcatgtgatttgagcat 337  Q
    ||||||||||||| || ||||| ||| |||||| ||||||||| |||||||||    
T  11355384 aatcatctaactcagaaaaccatgacattttacctgtcatgtgctttgagcat 11355436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 25 - 227
Target Start/End: Complemental strand, 30737880 - 30737674
Alignment:
Q  25 aaagttctcttctttgacaatggagccttcaagatcaatctattcttgcaataaaaaa--cccttatagcatgtgcttccattttcgtagtaga--catt 120  Q
    |||||||||| ||||||||| || || |||| |||||| |||| ||| ||||||||||  |||| ||||  | ||||||||| ||  ||| | |  | ||    
T  30737880 aaagttctctgctttgacaacggggctttcaggatcaacctatccttccaataaaaaaaaccctcatagtttttgcttccatcttaatagcacaaccctt 30737781  T
Q  121 ttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgctttcttgccatcttttctatgaatcaat 220  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||| | ||| ||||||||||||||| ||||||||||||||||    
T  30737780 ttgcagtaattgacctatactaatgagattacttctcatatttggcacatataacacatcaatgatacatgctttcttgccattttttctatgaatcaat 30737681  T
Q  221 actttac 227  Q
    |||||||    
T  30737680 actttac 30737674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 28451574 - 28451701
Alignment:
Q  137 atactaatgagattacttctcatatttggtacatataatacatcagtaatagatgctttcttgccatcttttctatgaatcaatactttactagttcttt 236  Q
    ||||| || ||||| |||||||||||| | ||||| || |||| ||| ||| |||||||||||||||||||| | |||||   |||||||| | ||| ||    
T  28451574 atactcataagattgcttctcatatttagcacataaaacacataagtgatatatgctttcttgccatcttttatgtgaattggtactttaccaattcctt 28451673  T
Q  237 taacacaaactatactattatttgcaaa 264  Q
     | |||| ||||| ||||||| ||||||    
T  28451674 cagcacacactattctattatctgcaaa 28451701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 333
Target Start/End: Original strand, 7499954 - 7500168
Alignment:
Q  119 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgctttcttgccatcttttctatgaatca 218  Q
    |||||||| ||||  || |||||||||||||| |||||||| ||||||||||| || |||||||| ||  | ||||||||| |||| || ||||||||||    
T  7499954 ttttgcagtaattaaccaatactaatgagattgcttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgtcatccttcctatgaatca 7500053  T
Q  219 atactttactagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaagactttttaca 318  Q
     |||||| | | | |  |   |||||||||||| ||| | |||||||||| | |||    ||| |||||||||||| || ||||||||||| || || ||    
T  7500054 gtactttcccaataccatctgcacaaactatacgattctctgcaaatcttatttttctattaactgaatcatctaattcagagaaccaagatttcttgca 7500153  T
Q  319 tgtcatgtgatttga 333  Q
    |||||||||||||||    
T  7500154 tgtcatgtgatttga 7500168  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 333
Target Start/End: Complemental strand, 9505197 - 9504983
Alignment:
Q  119 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgctttcttgccatcttttctatgaatca 218  Q
    ||||| || ||||| || |||||||||||||| |||||||| ||||||||||| || |||||||| ||  | ||||||||| |||| || |||||||| |    
T  9505197 ttttgtagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgacatccttcctatgaatta 9505098  T
Q  219 atactttactagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaagactttttaca 318  Q
     |||||| | | | |      ||||||||||| |||| | |||||||||| | |||    ||| |||||||||||| || ||||||||||| || || ||    
T  9505097 gtactttcccaataccagctgcacaaactataatattgtctgcaaatcttatttttctattaactgaatcatctaattcagagaaccaagatttcttgca 9504998  T
Q  319 tgtcatgtgatttga 333  Q
    |||||||||||||||    
T  9504997 tgtcatgtgatttga 9504983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 352
Target Start/End: Complemental strand, 33050542 - 33050399
Alignment:
Q  209 ctatgaatcaatactttactagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaag 308  Q
    ||||||||||| || |||| | ||| || |||| || | |||||||||| ||| |||||| |||||    ||||||||| |||||| |  ||| ||||||    
T  33050542 ctatgaatcaacacattaccatttccttcaacataatcgatactattatctgcgaatcttatctttctattaattgaataatctaatttagagtaccaag 33050443  T
Q  309 actttttacatgtcatgtgatttgagcatcgtgtatccagatac 352  Q
    |||||| |||||| |||| ||||||||||| |||||||||||||    
T  33050442 acttttaacatgttatgtaatttgagcatcatgtatccagatac 33050399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 45495640 - 45495746
Alignment:
Q  119 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgctttcttgccatcttttctatgaatca 218  Q
    |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| || |||||| | ||  | |||||||||||||| || ||||||||||    
T  45495640 ttttgcagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcaatgatgcaagctttcttgccatccttcctatgaatca 45495739  T
Q  219 atacttt 225  Q
     ||||||    
T  45495740 gtacttt 45495746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 45503382 - 45503488
Alignment:
Q  119 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgctttcttgccatcttttctatgaatca 218  Q
    |||||||| ||||| || |||||||||||||| |||||||| ||||||||||| || |||||| | ||  | |||||||||||||| || ||||||||||    
T  45503382 ttttgcagtaattgaccaatactaatgagattgcttctcatgtttggtacatacaacacatcaatgatgcaagctttcttgccatccttcctatgaatca 45503481  T
Q  219 atacttt 225  Q
     ||||||    
T  45503482 gtacttt 45503488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 333
Target Start/End: Complemental strand, 5987101 - 5986896
Alignment:
Q  128 aattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgctttcttgccatcttttctatgaatcaatactttac 227  Q
    ||||| || |||||||||||| |  ||||||| ||||||||||| || |||||||| ||  | |||||||||||||| || |||||||||| |||||| |    
T  5987101 aattgaccaatactaatgagactgtttctcatgtttggtacatacaacacatcagtgatgcaagctttcttgccatccttcctatgaatcagtacttttc 5987002  T
Q  228 tagttcttttaacacaaactatactattatttgcaaatcttgtcttttcgctaattgaatcatctaactcggagaaccaagactttttacatgtcatgtg 327  Q
     | |  |     |||||||||||||||| | |||||||||| | |||  | ||| |||||||||||| || ||||||||||| || ||   |||||||||    
T  5987001 caatattagctgcacaaactatactattgtctgcaaatcttatttttctgttaactgaatcatctaattcagagaaccaagatttcttgtctgtcatgtg 5986902  T
Q  328 atttga 333  Q
    ||||||    
T  5986901 atttga 5986896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 62632 - 62533
Alignment:
Q  119 ttttgcagcaattggcctatactaatgagattacttctcatatttggtacatataatacatcagtaatagatgctttcttgccatcttttctatgaatca 218  Q
    |||||||  ||||| || |||||| ||||||| |||||||| ||||||||||| || |||||||| ||  | ||| |||||||||| || ||||||||||    
T  62632 ttttgcaataattgaccaatactactgagattgcttctcatgtttggtacatacaacacatcagtgatgcaggctctcttgccatccttcctatgaatca 62533  T

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