View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_47 (Length: 381)
Name: NF6872A_low_47
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 8946829 - 8947195
Alignment:
| Q |
11 |
caaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtatt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946829 |
caaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtatt |
8946928 |
T |
|
| Q |
111 |
aatgttcgaatttttcgcagataaccctttattgaggaatctagctccactgagtttcttgttgcaaaatgatgaattgttggtatttgcaaattgacat |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
8946929 |
aatgttcgaatttttcgcagataaccctttattgaagaatcttgctccaatgagtttcttgttgcaaaatgatgaattgttgctattttcaaattgacat |
8947028 |
T |
|
| Q |
211 |
aacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaaccaataatgacat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8947029 |
aacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactctcgggccaaacacctgagtcaatcaaaccaataatgacat |
8947128 |
T |
|
| Q |
311 |
cttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8947129 |
cttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
8947195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 13 - 376
Target Start/End: Complemental strand, 8962262 - 8961899
Alignment:
| Q |
13 |
aagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtattaa |
112 |
Q |
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| T |
8962262 |
aagaatgatgcaccattaacctgattccccgctaccgttgttgaagtgtgggttccatgaccatctgtgtcacgtgtagagttcactgttgttgtatcaa |
8962163 |
T |
|
| Q |
113 |
tgttcgaatttttcgcagataaccctttattgaggaatctagctccactgagtttcttgttgcaaaatgatgaattgttggtatttgcaaattgacataa |
212 |
Q |
| |
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|| | ||||| |||| | |||||||| |||| |||||| |||||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
8962162 |
tggtggaattcatcgccaagaaccctttgttgaagaatcttgctccaatgagttttttgttgcaaaaagatgaattgttggtattttcaaattgacataa |
8962063 |
T |
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| Q |
213 |
cttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaaccaataatgacatct |
312 |
Q |
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|||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||| ||||||||||| | ||||||| ||||| |||||||||| |
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| T |
8962062 |
tttccctttccattttgaaggaattttagtaaatccattatcattgaaactttcactttctggccaaacaccggtatcaatcacaccaacaatgacatct |
8961963 |
T |
|
| Q |
313 |
tgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagt |
376 |
Q |
| |
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| ||| | | ||||||| |||| |||||| | ||||| || ||||||||||| ||||||| |
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|
| T |
8961962 |
tttccataatcagaagctagccacacccctttgtagggattaagaccaaggaattgaggtgagt |
8961899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 11 - 378
Target Start/End: Complemental strand, 8973666 - 8973299
Alignment:
| Q |
11 |
caaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtatt |
110 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||||| | ||||| ||||| || | |
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| T |
8973666 |
caaagaatgatgcaccatcaacttgattcccagctgctgttgttgaagtgtgtgtcccatgaccatttgtgtcacgtgtggagttcaaaattgtgttagt |
8973567 |
T |
|
| Q |
111 |
aatgttcgaatttttcgcagataaccctttattgaggaatctagctccactgagtttcttgttgcaaaatgatgaattgttggtatttgcaaattgacat |
210 |
Q |
| |
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| || | || ||| || | |||||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
8973566 |
tagatttggatattttgccaaaaaccctttgttgaagaatctagctccaatgagtttcttgttgcaaaaagatgaattgttggtattttcaaattgacat |
8973467 |
T |
|
| Q |
211 |
aacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaaccaataatgacat |
310 |
Q |
| |
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|| | |||||||||||||||||| |||| || ||| ||||||| || |||||||||||||| ||||||||||| | ||||||| ||||| |||||||| |
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| T |
8973466 |
aattgccctttccattttgaaggaatttgaggcatgtcattatctttgaaactttcactttctggccaaacaccggtatcaatcataccaacaatgacat |
8973367 |
T |
|
| Q |
311 |
cttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtga |
378 |
Q |
| |
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||| ||| | | |||||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
8973366 |
ctttgccataatcagaagctggccatgcccctttgtatgaattaaggccaaggaattgtggtgagtga |
8973299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 9950141 - 9950244
Alignment:
| Q |
11 |
caaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtatt |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | || |||| |||||||||||| | | | ||| ||| | || |||||| ||||| ||||||||||| |
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| T |
9950141 |
caaagaaaaatgcaccatcaacttgatttcaagttgttgttaatgaagtgtgggtctcttaatcatatgtatgacatgtagtattcacaattgttgtatt |
9950240 |
T |
|
| Q |
111 |
aatg |
114 |
Q |
| |
|
|||| |
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| T |
9950241 |
aatg |
9950244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 21687968 - 21688346
Alignment:
| Q |
11 |
caaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgtagtgttcactattgttgtatt |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||| || || || ||||| |||||||||||||| | ||||| ||||||||| | |
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| T |
21687968 |
caaagaaagatgcaccatcaactttgcttccagctgctgttgttgaagtatgtgtcccgtgaccgtttgtgtcacgtgtggagttcaaaattgttgtact |
21688067 |
T |
|
| Q |
111 |
aatgttcgaatttttcgcagataaccctttattgaggaatctagctccactgagtttcttgttgcaaaatgatgaattg------------ttggtattt |
198 |
Q |
| |
|
|||||| || | ||| || | || ||||| |||| ||| ||||||||| |||||||||||||||| || ||| ||||| |||| ||| |
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| T |
21688068 |
aatgttggagtgttttgccaagaagcctttgttgaagaacctagctccaatgagtttcttgttgcacaaagataaattgattgactggatgttggaattc |
21688167 |
T |
|
| Q |
199 |
gcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaac |
298 |
Q |
| |
|
||||||||||||| | |||||||||||||| || |||||||||||||||| ||| |||||||||||||||| ||||||||||| | ||| || | || |
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|
| T |
21688168 |
tcaaattgacataattggcctttccattttgagggtattttagtcattccatcatctctaaaactttcactttctggccaaacaccagtgtctattacac |
21688267 |
T |
|
| Q |
299 |
caataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgtggtgagtg |
377 |
Q |
| |
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||| ||||| ||||| |||||| | ||||| ||||||||||||| | ||||||| |||||||| ||||| |||||||| |
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| T |
21688268 |
caacaatgatatctttaccaaaatcagaagttggccatgcccctctatatggattaaggccaagaaattgaggtgagtg |
21688346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 34963779 - 34963857
Alignment:
| Q |
217 |
cctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatca |
295 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||| || || || |||||||| |||||||| |||| |||||||| |
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| T |
34963779 |
cctttccattttgaaggaattttagtcattccatcatctttgaagctctcactttctggccaaactcctgtgtcaatca |
34963857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 34963606 - 34963657
Alignment:
| Q |
38 |
ttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgt |
89 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||||| | |||||||||||| |
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| T |
34963606 |
ttccagctgctgttgttgaagtatgagttccatgaccttctgtgtcacgtgt |
34963657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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