View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_61 (Length: 348)
Name: NF6872A_low_61
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 23 - 340
Target Start/End: Original strand, 4159944 - 4160261
Alignment:
| Q |
23 |
agatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagt |
122 |
Q |
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| T |
4159944 |
agatctcactctatttgctgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagt |
4160043 |
T |
|
| Q |
123 |
gattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatattggtggtggaaatggaacaactggta |
222 |
Q |
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| T |
4160044 |
gattccaaaatgattaatttggcaatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggta |
4160143 |
T |
|
| Q |
223 |
agattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacatatgttgg |
322 |
Q |
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| T |
4160144 |
agattatttgtgagacatttcctaagttgacttgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaatttgacatatgttgg |
4160243 |
T |
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| Q |
323 |
tggggacatgttcatatc |
340 |
Q |
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| T |
4160244 |
tggggacatgttcatatc |
4160261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 47 - 340
Target Start/End: Complemental strand, 4172034 - 4171741
Alignment:
| Q |
47 |
tttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagtgattcaaaaatgattaatttggca |
146 |
Q |
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| T |
4172034 |
tttaggatgtgatttatgggagtttcttaacaaaaatcctgaatataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggca |
4171935 |
T |
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| Q |
147 |
atgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatattggtggtggaaatggaacaactggtaagattatttgtgagacattttcta |
246 |
Q |
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| T |
4171934 |
ttgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatatccta |
4171835 |
T |
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| Q |
247 |
agttgaaatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacatatgttggtggggacatgttcatatc |
340 |
Q |
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| T |
4171834 |
agttgagatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaatttgacatatgtcggtggggacatgttcatatc |
4171741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 63 - 336
Target Start/End: Complemental strand, 4177641 - 4177368
Alignment:
| Q |
63 |
tgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatt |
162 |
Q |
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| T |
4177641 |
tgggattttcttgataaaaatcctgaatataatagatcatttaatgatgcaatggctagtgattctaaattgataaacttggcattgagagattgtgatt |
4177542 |
T |
|
| Q |
163 |
tggtgtttgaggggttggaatcaattgtggatattggtggtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgt |
262 |
Q |
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| T |
4177541 |
ttgtgtttgatggattggaatcaattgtggatgttggtggtggaaatggaaccactggtaaaattatttgtgagacttttcctaagttgaaatgtattgt |
4177442 |
T |
|
| Q |
263 |
ttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacatatgttggtggggacatgttca |
336 |
Q |
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| T |
4177441 |
gtttgataggccacaagttgtagagaacttatctggaagcaataatttgacttatgttggtggggacatgttca |
4177368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 285
Target Start/End: Original strand, 34343525 - 34343695
Alignment:
| Q |
115 |
tggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatattggtggtggaaatggaac |
214 |
Q |
| |
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||||||||||||| ||||| | |||||||| ||||| |||||| | ||||||||| ||| | || || ||||||||| |||||||||||| |||||| |
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| T |
34343525 |
tggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggattgattctattgtggatgttggtggtggaactggaac |
34343624 |
T |
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| Q |
215 |
aactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtag |
285 |
Q |
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| T |
34343625 |
cacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgatcttccacaggttgtag |
34343695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 34330971 - 34331071
Alignment:
| Q |
168 |
tttgaggggttggaatcaattgtggatattggtggtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttg |
267 |
Q |
| |
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||||||||| | ||||| ||||||||| ||||||||||||||||||| || | ||| ||||| |||||| | ||| ||||| | |||||| ||||||||| |
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| T |
34330971 |
tttgaggggatagaatctattgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgaggcttttcctaaggtcaaatgtcttgtttttg |
34331070 |
T |
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| Q |
268 |
a |
268 |
Q |
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| T |
34331071 |
a |
34331071 |
T |
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