View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_62 (Length: 348)
Name: NF6872A_low_62
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 6 - 342
Target Start/End: Original strand, 5188274 - 5188609
Alignment:
| Q |
6 |
tccaagaatatcttagagggagaccaacccattcgataacttcactattatttttctttcttcttccnnnnnnnnn-ctccactattattgttggcatct |
104 |
Q |
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| T |
5188274 |
tccaaaaatatcttagagggagaccaacc-attcgataacttcactattatttttctttcttcttccaaaaaaaaaactccactattattgttggcatct |
5188372 |
T |
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| Q |
105 |
actatttgctaaaagaatatactatatggcatatgcaaggcaacgtacttcagcatgcttatttttatgagaattaagtattccaagtcaattaatatta |
204 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5188373 |
actatttgctaaaaggatatactatatggcatatgcaaggcaacgtacttcagcatgcttatttttatgagaattaagtattccaagtcaattaatatta |
5188472 |
T |
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| Q |
205 |
tgtcatcggaatattccttgtaccnnnnnnnnncgtagctgtcatcttgatgaataaaataattcatatatactgtataggaagggatttggaatctgca |
304 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5188473 |
tgtcatcggaatattccttgtacctttttttttcgtagctgtcattttgatgaataaaataattcatatatactgtata-gaagggatttggaatctgca |
5188571 |
T |
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| Q |
305 |
tcaaacccttgcgtcgttgtgttgcatgatgaatgaaa |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
5188572 |
tcaaacccttgcgtcgttgtgttgcatgatgaatgaaa |
5188609 |
T |
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