View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_64 (Length: 343)
Name: NF6872A_low_64
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 36170699 - 36170376
Alignment:
| Q |
14 |
atatagcaactgatccacaaaaccataactcattaaaatacttacagagctagatgaagtaaaacacaaactttcaatagccctcattgttatttccttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36170699 |
atatagcaactgatccacaaaaccataactcattaaaatacttacagagctagatgaagtaaaacacaaactttcaatagccctcattgttatttccttt |
36170600 |
T |
|
| Q |
114 |
gtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacggattccgccttctctaatcaccgtttgcctaaccaactcatctccaaagg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36170599 |
gtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacggattccgccttctctaatcaccatttgcctaaccaactcatctccaaagg |
36170500 |
T |
|
| Q |
214 |
caatattctgaatgaaccctattgaattcacctgaattgcttcctcctttgatttcactagcctgataaaagtcgacaccgcatcctcctcaaccataaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36170499 |
caatattctgaatgaaccctattgaattcacctgaattgcttcctcctttgatttcactagcctgataaaagtcgacaccgcatcctcctcaaccatgaa |
36170400 |
T |
|
| Q |
314 |
tctcttaacttcctcaacaccaac |
337 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
36170399 |
tctcttaacttcctcaacaccaac |
36170376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 1286343 - 1286394
Alignment:
| Q |
14 |
atatagcaactgatccacaaaaccataactcattaaaatacttacagagcta |
65 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286343 |
atatagcaactgatccacaaaaccataactcattaaaatacttacagagcta |
1286394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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