View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_66 (Length: 341)
Name: NF6872A_low_66
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_66 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 31 - 335
Target Start/End: Original strand, 13960318 - 13960622
Alignment:
| Q |
31 |
cagagaaacatcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatc |
130 |
Q |
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| T |
13960318 |
cagagaaacatcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatc |
13960417 |
T |
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| Q |
131 |
ccaacgtcaattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaaga |
230 |
Q |
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| T |
13960418 |
ccaacgtcaattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaaga |
13960517 |
T |
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| Q |
231 |
aaaccattagaagaacaacaatgtttcgtagctgccgatggaagaaccaaatccggcagctcaagtggctttgttttccaaagttgtcatttcacaggtg |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13960518 |
aaaccattagaagaacaacaatgtttcgtagctgccgatggaagaaccaaatctgacagctcaagtggctttgttttccaaagttgtcatttcacaggtg |
13960617 |
T |
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| Q |
331 |
cacta |
335 |
Q |
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||||| |
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| T |
13960618 |
cacta |
13960622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 13967491 - 13967674
Alignment:
| Q |
40 |
atcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtca |
139 |
Q |
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| T |
13967491 |
atcaagcagttgccctccgagtaacagcagatcaagcaatattccacaactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgtca |
13967590 |
T |
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| Q |
140 |
attctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaat |
223 |
Q |
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| T |
13967591 |
attctaccgtgactgcgccatctctggcacaatcgactttgtttttggcgacgcctttggagttttccaaaattgcaaactaat |
13967674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 39 - 236
Target Start/End: Complemental strand, 49871189 - 49870992
Alignment:
| Q |
39 |
catcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtc |
138 |
Q |
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| T |
49871189 |
catcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtgaaatgaacggttaccaagatacactctacacacaatccaaaagac |
49871090 |
T |
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| Q |
139 |
aattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaagaaaacca |
236 |
Q |
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| T |
49871089 |
aattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaaactcatcgttagaaaacca |
49870992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 49865249 - 49865135
Alignment:
| Q |
42 |
caagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtcaat |
141 |
Q |
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| T |
49865249 |
caagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtcaaatggacggttaccaagatacactctacacacaatccaaaagacaat |
49865150 |
T |
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| Q |
142 |
tctaccgtgactgca |
156 |
Q |
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| T |
49865149 |
tctaccgcgactgca |
49865135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 6835 - 6875
Alignment:
| Q |
135 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
175 |
Q |
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| T |
6835 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
6875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 44067770 - 44067730
Alignment:
| Q |
135 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
175 |
Q |
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| T |
44067770 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
44067730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 44087534 - 44087574
Alignment:
| Q |
135 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
175 |
Q |
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| T |
44087534 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
44087574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 44093076 - 44093036
Alignment:
| Q |
135 |
cgtcaattctaccgtgactgcagcatctctggcacaatcga |
175 |
Q |
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| T |
44093076 |
cgtcaattctaccgtgactgcaacatctatggaacaatcga |
44093036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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