View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_67 (Length: 338)
Name: NF6872A_low_67
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 35489919 - 35489618
Alignment:
| Q |
21 |
ggaagtatgattgctatcaaacttggagttagcggtgaaggctcgtttacaaaaaccaaagctgatcttctcttagtctttatatgtctatatgttgcgg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35489919 |
ggaagtatgattgctatcaaacttggagttagcggtgaaggctcgtttacaaaaactgaagctgatcttctcttagtctttatatgtctatatgttgcgg |
35489820 |
T |
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| Q |
121 |
catttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaa |
220 |
Q |
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| T |
35489819 |
catttgcatggtcttggggtgcgctgggatggttagttcccagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaa |
35489720 |
T |
|
| Q |
221 |
catgttgttcacctctatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggacttttcttcttctttgctggctttgtgctcatgatg |
320 |
Q |
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| T |
35489719 |
catgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggacttttcttcttctttgctggctttgtgctcatcatg |
35489620 |
T |
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| Q |
321 |
tc |
322 |
Q |
| |
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| T |
35489619 |
tc |
35489618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 284
Target Start/End: Complemental strand, 18233999 - 18233837
Alignment:
| Q |
122 |
atttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaac |
221 |
Q |
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| T |
18233999 |
atttgcatggtcttggggtcctctaggttggttggtgccaagtgaaatattcccactcgaagttcgttctgcggctcaaagtatcaatgtctctgttaac |
18233900 |
T |
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| Q |
222 |
atgttgttcacctctatcattgctcaagtttttcttaccatgctttgtcacttgaagtttgga |
284 |
Q |
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| T |
18233899 |
atgatttgcacctttatcattgctcaaattttcactacaatgctttgtcacatgaagtttgga |
18233837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 87 - 311
Target Start/End: Original strand, 14233090 - 14233314
Alignment:
| Q |
87 |
cttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtcc |
186 |
Q |
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|||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||| |||| || || | |
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| T |
14233090 |
cttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaaatatgcgctctagaggttc |
14233189 |
T |
|
| Q |
187 |
gatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcacctctatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggact |
286 |
Q |
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|| | ||||||||||||| |||||||| ||||||||||| ||||| | ||| ||||||||||| || || |||||||||||||||||||||||||| || |
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| T |
14233190 |
gaccagcaggtcaagctataaatgttgcggtgaacatgttcttcacatttatgattgctcaagtcttcctaaccatgctttgtcacttgaagtttggcct |
14233289 |
T |
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| Q |
287 |
tttcttcttctttgctggctttgtg |
311 |
Q |
| |
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|||||| ||||||||||| |||||| |
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| T |
14233290 |
tttctttttctttgctggttttgtg |
14233314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 87 - 311
Target Start/End: Original strand, 14242764 - 14242988
Alignment:
| Q |
87 |
cttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtcc |
186 |
Q |
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|||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||| ||||| |||| || || | |
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| T |
14242764 |
cttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaagtatgcgctctagaggttc |
14242863 |
T |
|
| Q |
187 |
gatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcacctctatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggact |
286 |
Q |
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|| | ||||||||||||| |||||||| ||||||||||| ||||| | ||| ||||||||||| || || |||||||||||||||||||||||||| || |
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| T |
14242864 |
gaccagcaggtcaagctataaatgttgcggtgaacatgttcttcacatttatgattgctcaagtcttcctaaccatgctttgtcacttgaagtttggcct |
14242963 |
T |
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| Q |
287 |
tttcttcttctttgctggctttgtg |
311 |
Q |
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|||||| ||||||||||| |||||| |
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| T |
14242964 |
tttctttttctttgctggttttgtg |
14242988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 87 - 278
Target Start/End: Original strand, 51580524 - 51580714
Alignment:
| Q |
87 |
cttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtcc |
186 |
Q |
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||||| ||| |||||||| || |||||||||||||||||| |||||||||| || | || |||| | || |||||||| || |||||||| || |
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| T |
51580524 |
cttcttttattctttataagtgcatatgttgcggcatttgctgggtcttggggcccgctaggttggtcgga-ccaagtgaaatttgttctcttgaggttt |
51580622 |
T |
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| Q |
187 |
gatctgcaggtcaagctaccaatgttgcagtgaacatgttgttcacctctatcattgctcaagtttttcttaccatgctttgtcacttgaag |
278 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||| ||||| | | | ||||||||||||| || | ||||||||||||||||||| |
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| T |
51580623 |
gatctgcaggtcaagctatcaatgttgccgtgaacatgttattcacatttgttgttgctcaagttttcctcaacatgctttgtcacttgaag |
51580714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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