View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_68 (Length: 338)
Name: NF6872A_low_68
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_68 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 45282305 - 45282630
Alignment:
| Q |
13 |
gagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccta |
112 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45282305 |
gagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctt |
45282404 |
T |
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| Q |
113 |
cgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcat |
212 |
Q |
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| T |
45282405 |
ggtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcat |
45282504 |
T |
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| Q |
213 |
ggataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaa |
312 |
Q |
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| T |
45282505 |
ggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaa |
45282604 |
T |
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| Q |
313 |
atgaattttgagagtgatgccacttt |
338 |
Q |
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|||||||||||||||||||||||||| |
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| T |
45282605 |
atgaattttgagagtgatgccacttt |
45282630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 45274060 - 45274387
Alignment:
| Q |
11 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
110 |
Q |
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| T |
45274060 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcc |
45274159 |
T |
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| Q |
111 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattc |
210 |
Q |
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| T |
45274160 |
tacgtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgc |
45274259 |
T |
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| Q |
211 |
atggataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaa |
310 |
Q |
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| T |
45274260 |
atggataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaa |
45274359 |
T |
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| Q |
311 |
aaatgaattttgagagtgatgccacttt |
338 |
Q |
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|||| ||||||||||||||||| ||||| |
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| T |
45274360 |
aaataaattttgagagtgatgctacttt |
45274387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 45293643 - 45293904
Alignment:
| Q |
11 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
110 |
Q |
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|||||| || ||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293643 |
cagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
45293742 |
T |
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| Q |
111 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattc |
210 |
Q |
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| T |
45293743 |
ttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgc |
45293842 |
T |
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| Q |
211 |
atggataatcaattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
269 |
Q |
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|||||| |||||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
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| T |
45293843 |
atggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 45302603 - 45302864
Alignment:
| Q |
11 |
cagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
110 |
Q |
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|||||| || ||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45302603 |
cagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcc |
45302702 |
T |
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| Q |
111 |
tacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattc |
210 |
Q |
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| ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
45302703 |
ttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgc |
45302802 |
T |
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| Q |
211 |
atggataatcaattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
269 |
Q |
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|||||| |||||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
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| T |
45302803 |
atggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 25 - 332
Target Start/End: Original strand, 45270547 - 45270852
Alignment:
| Q |
25 |
ttgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatg |
124 |
Q |
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||||||||| | ||||||||| ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45270547 |
ttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatg |
45270646 |
T |
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| Q |
125 |
ccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaatt |
224 |
Q |
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| T |
45270647 |
ccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaatt |
45270746 |
T |
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| Q |
225 |
aattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagtt-atgttttcttcaaaaatgaattttga |
323 |
Q |
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||||||||| ||| || ||| |||||||||| | ||| | | | ||| |||||||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
45270747 |
aattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttga |
45270843 |
T |
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| Q |
324 |
gagtgatgc |
332 |
Q |
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| T |
45270844 |
gagtgatgc |
45270852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 45293957 - 45294008
Alignment:
| Q |
280 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatg |
331 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatg |
45294008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 45302917 - 45302968
Alignment:
| Q |
280 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatg |
331 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatg |
45302968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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