View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_7 (Length: 479)
Name: NF6872A_low_7
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 260 - 462
Target Start/End: Original strand, 51376501 - 51376703
Alignment:
| Q |
260 |
attccagagatgatatagggcatattgcattaggcttaaacgccttacaaagttacccatcatcacaagtaaatgagacaaactgataaaatacgcaagg |
359 |
Q |
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| T |
51376501 |
attccagagatgatatagggcatattgcattaggcttaaacgccttacaaagttacccatcatcacaagtaaatgagacaaactcataaaatacgcaagg |
51376600 |
T |
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| Q |
360 |
tacatatttttaactttcaagcatttgacattaatctttaagttttgagcatcaaacattaaatttgtaattatcaaatacgcattgtgaccacattgat |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51376601 |
tacatatttttaactttcaagcatttgacattaatctttaagtttcgagcatcaaacattaaatttgtaattatcaaatacgcattgtgaccgcattgat |
51376700 |
T |
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| Q |
460 |
gtc |
462 |
Q |
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||| |
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| T |
51376701 |
gtc |
51376703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 51376286 - 51376503
Alignment:
| Q |
23 |
actcagaaacgagaatagcatacataaactccatcattcatgacagcccacctagcattttccctattccattgaacaatggctccattggatacaacaa |
122 |
Q |
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| T |
51376286 |
actcagaaacgagaatagcatacataaactccatcattcatgacagcccacctagcattttccctatcccattgaacaatggctccattagatacaacaa |
51376385 |
T |
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| Q |
123 |
a----gataccagtgccaaagccatatggaccaccctttttggataatatttgtttactttccaatgacccaagcttctcttaccaagccattgaaattt |
218 |
Q |
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| T |
51376386 |
attaagataccagtgccaaagccatatggaccaccctttttggatattatttgtttactttccaatggcccaagcttctcttactaagccattgaaattt |
51376485 |
T |
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| Q |
219 |
gaatgcctaaatcagatt |
236 |
Q |
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| T |
51376486 |
gaatgcctaaatcagatt |
51376503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 51850302 - 51850221
Alignment:
| Q |
60 |
tcatgacagcccacctagcattttccc-tattccattgaacaatggctccattggatacaacaaagataccagtgccaaagc |
140 |
Q |
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|||||||||||||| |||||||||||| ||| || |||||||||||||||||| |||||||||||||||| |||| |||||| |
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| T |
51850302 |
tcatgacagcccacatagcattttcccctatccctttgaacaatggctccattagatacaacaaagatacaagtgtcaaagc |
51850221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 51820752 - 51820671
Alignment:
| Q |
60 |
tcatgacagcccacctagcattt-tccctattccattgaacaatggctccattggatacaacaaagataccagtgccaaagc |
140 |
Q |
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|||||||||||||| |||||||| ||||| || |||||||| || |||||| |||||| ||||||||| ||||| ||||| |
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| T |
51820752 |
tcatgacagcccacatagcatttgatcctatccctttgaacaaaggttccattagatacagcaaagatactagtgctaaagc |
51820671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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