View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_70 (Length: 337)
Name: NF6872A_low_70
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_70 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 337
Target Start/End: Complemental strand, 3683256 - 3682936
Alignment:
| Q |
12 |
aatatggattgatccagaggctatgtagaaaaaatgagggtctgtgatagtatgctttagaatcaccacagcacaaaaagcaagcaatattcccaacaag |
111 |
Q |
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| T |
3683256 |
aatatggattgatccagaggctatgtagaaaaaatgagggtctgtgatagtatgctttagaatcaccacagcacaaaaagcaagcaatattcccaacaag |
3683157 |
T |
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| Q |
112 |
atcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccctctttgatcccattttgttgacaaaaaactaaaattcag |
211 |
Q |
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| T |
3683156 |
atcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccctctttgatcccattttgttgacaaaaaactaaaattcag |
3683057 |
T |
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| Q |
212 |
caaccaaaatagggaggggnnnnnnnnncttctcaagaatttgtatttgtgctcacacaatattttggagtggtgtagttcgattgagtaattgtagtga |
311 |
Q |
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| T |
3683056 |
caaccaaaata-----ggggttttttttcttctcaagaatttgtatttgtgctcacacaatattttggagtggtgtagttcgattgagtaattgtagtga |
3682962 |
T |
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| Q |
312 |
ttggagaatgatgtattgatatggcg |
337 |
Q |
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| T |
3682961 |
ttggagaatgatgtattgatatggcg |
3682936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 188
Target Start/End: Complemental strand, 3661453 - 3661277
Alignment:
| Q |
12 |
aatatggattgatccagaggctatgtagaaaaaatgagggtctgtgatagtatgctttagaatcaccacagcacaaaaagcaagcaatattcccaacaag |
111 |
Q |
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| T |
3661453 |
aatatggactgtttcagaggctttgaagaaaaaatttggctctctgatagtatgctttagaaccacaatagcacaaaaagcaagcaatattcccaaaaag |
3661354 |
T |
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| Q |
112 |
atcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccctctttgatcccatttt |
188 |
Q |
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| T |
3661353 |
atcttcactttcattgatcttttcctcagccatccaaacataacattcaccggtgaatccctctttgatcccatttt |
3661277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 74 - 220
Target Start/End: Complemental strand, 3666291 - 3666146
Alignment:
| Q |
74 |
tcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccct |
173 |
Q |
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| T |
3666291 |
tcaccacagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgacctattcctcaaccagctagacaatacattcacgggagaatcctt |
3666192 |
T |
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| Q |
174 |
ctttgatcccattttgttgacaaaaaactaaaattcagcaaccaaaa |
220 |
Q |
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| T |
3666191 |
ctttgatcccattttg-tgaccaaaaataaaaatctagcaaccaaaa |
3666146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 3675765 - 3675641
Alignment:
| Q |
66 |
ctttagaatcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgca |
165 |
Q |
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||||||| ||||| |||| |||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| | |||||||||||| | |
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| T |
3675765 |
ctttagagccaccaaagcagaaaatgcaagcaatattcccaaaaagattttcactttcattgatctcttcctcaaccatatagacaaaacattcacaggg |
3675666 |
T |
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| Q |
166 |
aaatccctctttgatcccattttgt |
190 |
Q |
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| T |
3675665 |
gaatccctctttgatcccattttgt |
3675641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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