View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_71 (Length: 336)

Name: NF6872A_low_71
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_71
NF6872A_low_71
[»] chr2 (1 HSPs)
chr2 (48-228)||(37598680-37598859)
[»] chr3 (1 HSPs)
chr3 (53-195)||(49906906-49907043)
[»] chr1 (2 HSPs)
chr1 (53-228)||(10160016-10160192)
chr1 (95-143)||(31860813-31860861)
[»] chr5 (2 HSPs)
chr5 (53-120)||(18475930-18475994)
chr5 (53-127)||(30335450-30335521)
[»] chr6 (2 HSPs)
chr6 (53-122)||(67160-67226)
chr6 (53-228)||(6261699-6261870)
[»] chr4 (1 HSPs)
chr4 (58-127)||(14272418-14272484)
[»] chr8 (1 HSPs)
chr8 (48-127)||(37044348-37044424)
[»] chr7 (1 HSPs)
chr7 (103-204)||(5467525-5467626)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 48 - 228
Target Start/End: Complemental strand, 37598859 - 37598680
Alignment:
Q  48 acatgattattaattgttccaagaacatctctttctatatactacggtacaagagatgaatcaaatgctctagcaagatatacatgcatacgaacgagta 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37598859 acatgattattaattgttccaagaacatctctttctatatactacggtacaagagatgaatcaaatgctctagcaagatatacatgcatacgaacgggta 37598760  T
Q  148 agcgtgttgcactcnnnnnnnggaagcaagtcgcaattgcgtagaaataaataaaaatagatctctctattgttatatgaa 228  Q
    |||||||||||||        | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37598759 agcgtgttgcact-tttttttgaaagcaggtcgcaattgcatagaaataaataaaaatagatctctctattgttatatgaa 37598680  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 49907043 - 49906906
Alignment:
Q  53 attattaattgttccaagaacatctctttctatatactacggtacaagagatgaatcaaatgctctagcaagatatacatgcatacgaacgagtaagcgt 152  Q
    |||| ||||||||| |||||||||||||||||||||    | ||| |||||||  ||||||||||||||| ||||    |||||||| |||||| |||||    
T  49907043 attactaattgttctaagaacatctctttctatatag---gttacgagagatg--tcaaatgctctagcaggatacttgtgcatacggacgagtgagcgt 49906949  T
Q  153 gttgcactcnnnnnnnggaagcaagtcgcaattgcgtagaaat 195  Q
    ||||| |||       ||||||||||||||||||| |||||||    
T  49906948 gttgcgctctttttttggaagcaagtcgcaattgcatagaaat 49906906  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 10160192 - 10160016
Alignment:
Q  53 attattaattgttccaagaacatctctttctatatactacggtacaagagatgaatcaaatgctctagcaagatatacatgcatacgaacgagtaagcgt 152  Q
    |||| ||||| ||| ||||||||||||||||| |||    | |||||||||||||||||||| | ||||| ||||  |||||||||| ||| || ||||     
T  10160192 attactaattattctaagaacatctctttctacatag---gttacaagagatgaatcaaatgttgtagcatgatactcatgcatacggacgggtgagcgc 10160096  T
Q  153 gttgcactcnnnnnnnggaagcaagtcgcaattgcgtagaa---ataaat--aaaaatagatctctctattgttatatgaa 228  Q
    ||||| |||        ||||||||||||||||||||||||   ||||||  ||||||||||| || ||||||||||||||    
T  10160095 gttgc-ctctttttttagaagcaagtcgcaattgcgtagaaattataaataaaaaaatagatccctgtattgttatatgaa 10160016  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 31860813 - 31860861
Alignment:
Q  95 tacaagagatgaatcaaatgctctagcaagatatacatgcatacgaacg 143  Q
    |||||||||||||||| ||||||||||| ||||  | ||||||||||||    
T  31860813 tacaagagatgaatcacatgctctagcatgatacccgtgcatacgaacg 31860861  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 18475994 - 18475930
Alignment:
Q  53 attattaattgttccaagaacatctctttctatatactacggtacaagagatgaatcaaatgctctag 120  Q
    |||| ||||||||| |||||||||||||||||||||    | ||||||||||||||||||||||||||    
T  18475994 attactaattgttctaagaacatctctttctatatag---gttacaagagatgaatcaaatgctctag 18475930  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 30335521 - 30335450
Alignment:
Q  53 attattaattgttccaagaacatctctttctatatactacggtacaagagatgaatcaaatgctctagcaagata 127  Q
    |||| ||||||||| ||||| ||| |||||||||||    | ||||||||||||||||||||||||| |||||||    
T  30335521 attactaattgttctaagaatatccctttctatatag---gttacaagagatgaatcaaatgctctaacaagata 30335450  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 67226 - 67160
Alignment:
Q  53 attattaattgttccaagaacatctctttctatatactacggtacaagagatgaatcaaatgctctagca 122  Q
    |||| ||||||||| |||||||||| | ||||||||    | ||||||||||||||||||||||||||||    
T  67226 attactaattgttctaagaacatctatgtctatatag---gttacaagagatgaatcaaatgctctagca 67160  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 6261870 - 6261699
Alignment:
Q  53 attattaattgttccaagaacatctctttctatatactacggtacaagagatgaatcaaatgctctagcaagatatacatgcatacgaacgagtaagcgt 152  Q
    |||| ||||||||  |||||| ||||||||||||||    | |||||||||||  ||||||||||||| | |||||   |||||||||| |||| | | |    
T  6261870 attactaattgttttaagaacttctctttctatatag---gttacaagagatg--tcaaatgctctagtaggatatctgtgcatacgaatgagtgaccat 6261776  T
Q  153 gttgcactcnnnnnnnggaagcaagtcgcaattgcgtagaaa-taaataaaaatagatctctctattgttatatgaa 228  Q
    |||||||||       ||||||||||| ||||||| |||||| || ||||||| |  ||||| ||||| ||||||||    
T  6261775 gttgcactctttttatggaagcaagtcccaattgcatagaaattatataaaaaaaagtctctgtattgatatatgaa 6261699  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 14272484 - 14272418
Alignment:
Q  58 taattgttccaagaacatctctttctatatactacggtacaagagatgaatcaaatgctctagcaagata 127  Q
    ||||||||  ||||||| |||||||||||||    | |||||||||||||||||||||||||||| ||||    
T  14272484 taattgttataagaacaactctttctatatag---gttacaagagatgaatcaaatgctctagcaggata 14272418  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 37044424 - 37044348
Alignment:
Q  48 acatgattattaattgttccaagaacatctctttctatatactacggtacaagagatgaatcaaatgctctagcaagata 127  Q
    |||| |||| ||| ||||| ||||||||||||||| |||||    | |||||||||||||||||||| ||||||| ||||    
T  37044424 acatcattactaactgttctaagaacatctctttcaatatag---gttacaagagatgaatcaaatgttctagcaggata 37044348  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 5467525 - 5467626
Alignment:
Q  103 atgaatcaaatgctctagcaagatatacatgcatacgaacgagtaagcgtgttgcactcnnnnnnnggaagcaagtcgcaattgcgtagaaataaataaa 202  Q
    ||||||| ||||||||| || ||||  | |||||| | |||||| |||||||||| |||       |||||||| |||||||||||||||||| | ||||    
T  5467525 atgaatcgaatgctctatcaggatacccgtgcatatggacgagtgagcgtgttgcgctctttttttggaagcaattcgcaattgcgtagaaattattaaa 5467624  T
Q  203 aa 204  Q
    ||    
T  5467625 aa 5467626  T

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