View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_72 (Length: 336)

Name: NF6872A_low_72
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_72
NF6872A_low_72
[»] chr5 (1 HSPs)
chr5 (18-300)||(3938686-3938945)
[»] chr7 (6 HSPs)
chr7 (129-207)||(12651704-12651782)
chr7 (227-295)||(47606574-47606642)
chr7 (129-208)||(12504948-12505027)
chr7 (54-116)||(12485932-12485994)
chr7 (54-116)||(12507364-12507426)
chr7 (54-116)||(12658250-12658312)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 3938945 - 3938686
Alignment:
Q  18 atcatcatcagtgccagacaagtctaaggtaaggtaagattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacata 117  Q
    |||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3938945 atcatcatcagtgccagacaagtctaaggtaag-----attatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacatc 3938851  T
Q  118 tttgaatgaagccacatttgagacggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaagctaagaagtt 217  Q
    ||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3938850 tttgaa------------------ggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaagctaagaagtt 3938769  T
Q  218 tggagagccttggtcgtcaaaatcaagattgagaagtgagagccatagttggttccatttcttggagaggatgcttgttgcag 300  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3938768 tggagagccttggtcgtcaaaatcaagagtgagaactgagagccatagttggttccatttcttggagaggatgcttgttgcag 3938686  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 12651782 - 12651704
Alignment:
Q  129 ccacatttgagacggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaag 207  Q
    ||||||||||| ||||| ||| |||| ||| |||  | ||||||| ||||||||||| ||||||||||| |||||||||    
T  12651782 ccacatttgagtcggaacgattggattggcgaggttgggtcacgcgtgagcatgactgagtagacaaaaagtcgaaaag 12651704  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 47606574 - 47606642
Alignment:
Q  227 ttggtcgtcaaaatcaagattgagaagtgagagccatagttggttccatttcttggagaggatgcttgt 295  Q
    ||||||||| || | || ||| |||| ||||||||||||| |||||||| |||| ||||||||||||||    
T  47606574 ttggtcgtcgaagtgaaaattaagaactgagagccatagtgggttccatctctttgagaggatgcttgt 47606642  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 12505027 - 12504948
Alignment:
Q  129 ccacatttgagacggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaagc 208  Q
    |||||||||||  ||||  ||||||||||||| |  | |||||| |||||||||||| ||||||| ||| ||||||||||    
T  12505027 ccacatttgaggtggaacaatcggatgggcaatgtggggtcacggatgagcatgactgagtagacgaaaagtcgaaaagc 12504948  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 12485994 - 12485932
Alignment:
Q  54 agattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacat 116  Q
    ||||| |||||||||  ||| |||||||||| ||  |||||||||||||||| ||||||||||    
T  12485994 agattctcaattccttttttgacagcaacaggaacaaatcgattgatatcatgtggatcacat 12485932  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 12507426 - 12507364
Alignment:
Q  54 agattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacat 116  Q
    ||||| |||||||||  ||| |||||||||| ||  |||||||||||||||| ||||||||||    
T  12507426 agattctcaattccttttttgacagcaacaggaacaaatcgattgatatcatgtggatcacat 12507364  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 12658312 - 12658250
Alignment:
Q  54 agattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacat 116  Q
    ||||| |||||||||  ||| |||||||||| ||  |||||||||||||||| ||||||||||    
T  12658312 agattctcaattccttttttgacagcaacaggaacaaatcgattgatatcatgtggatcacat 12658250  T

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