View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_74 (Length: 333)
Name: NF6872A_low_74
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 170 - 328
Target Start/End: Complemental strand, 7303778 - 7303625
Alignment:
| Q |
170 |
ttgaccttgagccaaaatcttcacatgataatttctatttttatccaaaatgttaagtgaaagaaatttttaa-tggaatatttgttggcattaaagatt |
268 |
Q |
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| T |
7303778 |
ttgaccttgagccaaattcttaccatgataatttctatttttatccaaaatgttaagtgaaaggaattttcaaatggaatatttgttggcattaaagatt |
7303679 |
T |
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| Q |
269 |
atattgtggatatagaatttgagattaactataacttctatttttgcctcattaccaact |
328 |
Q |
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| T |
7303678 |
atattgtggatatagaatttgagatt------aacttctatttttgcctcattaccaact |
7303625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 7303961 - 7303844
Alignment:
| Q |
26 |
tcttatgaactctaatattaagtttattaggagacaaacaaaccaagttgctcatagtttggctaggaaggcttcgcctatagcaaatttccgtattttc |
125 |
Q |
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| T |
7303961 |
tcttatgaactctaatgttaagtttattaggagacaaacaaaccaagttgctcatagtttggttagggaggcttcgcctatagctaatttccgtattttc |
7303862 |
T |
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| Q |
126 |
tataacattccaacatgt |
143 |
Q |
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| T |
7303861 |
tataacattccaacatgt |
7303844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 7304354 - 7304325
Alignment:
| Q |
1 |
atgaatgcacaaaatggaaaaagagtctta |
30 |
Q |
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| T |
7304354 |
atgaatgcacaaaatggaaaaagagtctta |
7304325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 791947 - 791991
Alignment:
| Q |
47 |
gtttattaggagacaaacaaaccaagttgctcatagtttggctag |
91 |
Q |
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| T |
791947 |
gtttattcggagacaaaccaacgaagttgctcatagttttgctag |
791991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 32639676 - 32639619
Alignment:
| Q |
26 |
tcttatgaactctaatattaagtttattaggagacaaacaaaccaagttgctcatagt |
83 |
Q |
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| T |
32639676 |
tcttatgaactctgatattaaattaattagaagacaagcaaacaaaattgctcatagt |
32639619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 4052865 - 4052909
Alignment:
| Q |
47 |
gtttattaggagacaaacaaaccaagttgctcatagtttggctag |
91 |
Q |
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| T |
4052865 |
gtttattcggagacaaaccaacgaagttgctcatagttttgctag |
4052909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 25070942 - 25070898
Alignment:
| Q |
47 |
gtttattaggagacaaacaaaccaagttgctcatagtttggctag |
91 |
Q |
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||||||| |||||||||| ||| |||||||||||||||| ||||| |
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| T |
25070942 |
gtttattcggagacaaaccaacgaagttgctcatagttttgctag |
25070898 |
T |
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