View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_75 (Length: 331)
Name: NF6872A_low_75
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_75 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 47705510 - 47705186
Alignment:
| Q |
7 |
ctgagatgaacctacaaggttacaagttgagctcaccaattccaagcaaagacccaaataatcgttctatacttgctttctttgctggaggggaacatgg |
106 |
Q |
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| T |
47705510 |
ctgaaatgaacctacaaggttacaagttgagctcaccaattccaagcaaagaatcaaataatcgttctatacttgctttctttgctggaggggaacatgg |
47705411 |
T |
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| Q |
107 |
tatgattagaaagacattactagatcaatggaaaggaaaagataaagaagtactagtgtatgaatatcttccnnnnnnncttaagtactttaaactcatg |
206 |
Q |
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| T |
47705410 |
tatgattagaaagacattactagatcaatggaaaggaaaagataaagaagtactagtgtatgaatatcttccaaaaaaacttaagtactttaaactcatg |
47705311 |
T |
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| Q |
207 |
ggaaaaagcaagttttgcttgtgtccaagtggctatgaagtagctagccctagacttgtggagtctataaacactggatgtgtccctgtgattgtttcgg |
306 |
Q |
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| T |
47705310 |
ggaaaaagcaagttttgcttgtgtccaagtggctatgaagtagctagccctagacttgtggagtctataaacactggatgtgtccctgtgattgtttcgg |
47705211 |
T |
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| Q |
307 |
ataactatcaattaccctttagtga |
331 |
Q |
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| T |
47705210 |
ataactatcaattaccctttagtga |
47705186 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 44629169 - 44629206
Alignment:
| Q |
213 |
agcaagttttgcttgtgtccaagtggctatgaagtagc |
250 |
Q |
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| T |
44629169 |
agcaagttttgtttgtgtccaagtggttatgaagtagc |
44629206 |
T |
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