View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_8 (Length: 477)

Name: NF6872A_low_8
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_8
NF6872A_low_8
[»] chr6 (2 HSPs)
chr6 (92-155)||(10070299-10070362)
chr6 (376-432)||(10069915-10069971)
[»] chr4 (2 HSPs)
chr4 (149-190)||(241406-241447)
chr4 (149-194)||(37463516-37463561)
[»] chr2 (1 HSPs)
chr2 (149-194)||(21497661-21497706)
[»] chr1 (1 HSPs)
chr1 (149-190)||(29739335-29739376)
[»] chr8 (1 HSPs)
chr8 (149-185)||(41005550-41005586)
[»] chr3 (1 HSPs)
chr3 (154-194)||(43329247-43329287)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 10070362 - 10070299
Alignment:
Q  92 atcagttcttagcatccatttagatatcgatgaagaaacctccattctcatgataatatatttt 155  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| ||||    
T  10070362 atcagttcttagcatccatttagatatcgataaagaaacctctattttcatgataatatgtttt 10070299  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 10069971 - 10069915
Alignment:
Q  376 ttgatccgttcgtgattgttgcactcactgtatatcgcattactgcattttaatggg 432  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||    
T  10069971 ttgatccgttcgtgattgttgcactcgttgtatatagcattactgtattttaatggg 10069915  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 241406 - 241447
Alignment:
Q  149 atattttatgcattgttcttaccgaccgagctaagctaacga 190  Q
    |||||||||||||||||| |||| ||||||||||||| ||||    
T  241406 atattttatgcattgttcataccaaccgagctaagcttacga 241447  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 37463561 - 37463516
Alignment:
Q  149 atattttatgcattgttcttaccgaccgagctaagctaacgatgac 194  Q
    |||| ||||||||||||| |||| ||||||||||||| ||||||||    
T  37463561 atatattatgcattgttcataccaaccgagctaagctcacgatgac 37463516  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 21497706 - 21497661
Alignment:
Q  149 atattttatgcattgttcttaccgaccgagctaagctaacgatgac 194  Q
    |||| |||||||||||||||||| |||||| |||||| ||||||||    
T  21497706 atatattatgcattgttcttaccaaccgagttaagctcacgatgac 21497661  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 29739376 - 29739335
Alignment:
Q  149 atattttatgcattgttcttaccgaccgagctaagctaacga 190  Q
    |||||||||||||||| |||||| || |||||||||||||||    
T  29739376 atattttatgcattgtccttaccaactgagctaagctaacga 29739335  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 41005586 - 41005550
Alignment:
Q  149 atattttatgcattgttcttaccgaccgagctaagct 185  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  41005586 atatgttatgcattgttcttaccgactgagctaagct 41005550  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 43329247 - 43329287
Alignment:
Q  154 ttatgcattgttcttaccgaccgagctaagctaacgatgac 194  Q
    ||||||||||||| ||||||| |||||||||| ||||||||    
T  43329247 ttatgcattgttcataccgactgagctaagcttacgatgac 43329287  T

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