View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_80 (Length: 324)
Name: NF6872A_low_80
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 55075128 - 55075423
Alignment:
| Q |
21 |
gcttggtggaagagatggaaaaggccaccaaatttttctgtttttcaacccaagggataatctttaaagttgattgtgacttaacctttcacttggcaca |
120 |
Q |
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| T |
55075128 |
gcttggtggaagagatggaaaaggccaacaaatttttctgtttttcaacccaagggataatctttaaagttgattgtgacttaacctttcacttggcaca |
55075227 |
T |
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| Q |
121 |
tgaaagtccatgttatctctccccacaaatcctctcatcaagacaacacattgtaagataaagggccctgtgatatcatgatatcctctcttcacatgaa |
220 |
Q |
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| T |
55075228 |
tgaaagtccatgttatctctccccacaaatcatctcatcaagacaacacattgtaagataaagggccctgtgatatcatgatatcctctcttcacatgaa |
55075327 |
T |
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| Q |
221 |
gatgctaacctctactctatccagctagattagtcttctgttgtttggaattttaattgatattagtaattttgtgtggtttctaaaatattcttc |
316 |
Q |
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| T |
55075328 |
gatgctaacctctactctatccagctagattagtcttctgttgtttgaaattttaattgatattagtaattttgtgtggtttctaaaatattcttc |
55075423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 50371291 - 50371212
Alignment:
| Q |
87 |
aagttgattgtgacttaacctttcacttggcacatgaaagtccatgtta-tctctccccacaaatcctctcatcaagacaa |
166 |
Q |
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|||||||| ||||||| |||||||| ||||||||||||| |||||||| ||||||||||||| || |||||||||||||| |
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| T |
50371291 |
aagttgatggtgactttacctttcatttggcacatgaaa-accatgttactctctccccacaattcttctcatcaagacaa |
50371212 |
T |
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