View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_84 (Length: 316)
Name: NF6872A_low_84
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_84 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 41010960 - 41010675
Alignment:
| Q |
8 |
gagatgaatatgatttcattgcagattctaaactttgcattccatgtaatgaacatcttttccttagtgttcttagttttgctagctccacacataatga |
107 |
Q |
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| T |
41010960 |
gagaagaatatgatttcattgcagattctaaactttgtattccatgtaatgaacatcttttccttagtgttcttagttttgctagctccacacataatga |
41010861 |
T |
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| Q |
108 |
aaaggtgtttgtttgtgtctgacatgagaaatttatcatcctttaattttacttgagacattagttcatatattatactagcttttaagttctaacagct |
207 |
Q |
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| T |
41010860 |
aaaggtgtttgtttgtgtctgacatgagaaatttatcatcctttaattttacttgagacattagttcatatattatactagcttttaagttctaacagct |
41010761 |
T |
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| Q |
208 |
atgctgatatatatagttgattgatgtgttgattaagtgtcatgtatgtagagtgccaatttgaatcaattaattcaggaacatga |
293 |
Q |
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| T |
41010760 |
atgctgatatatatagttgattcatgtgttgattaagtgtcatgtatgtagagtgccaatttgaatcaattaattcaggaacatga |
41010675 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 28118917 - 28118978
Alignment:
| Q |
16 |
tatgatttcattgcagattctaaactttgcattccatgtaatgaacatcttttccttagtgt |
77 |
Q |
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| T |
28118917 |
tatgatttcatggctgattcaaaactatgtattccttgtcatgaacatcttttcctaagtgt |
28118978 |
T |
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