View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_87 (Length: 314)
Name: NF6872A_low_87
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_87 |
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| [»] scaffold0118 (1 HSPs) |
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| [»] scaffold0180 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 26456604 - 26456304
Alignment:
| Q |
8 |
gagatgaacatgcattctaattaagcactaagtacagcctcatgatattgacttggaatttgaaagtatgctcctcctcgtagtctcaggtttgaatctc |
107 |
Q |
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|||||| |||||||||||||||||||||||||||| |||| |||||||| ||| |||| ||||| ||||||||||||||||||||| |||||||||| |
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| T |
26456604 |
gagatggacatgcattctaattaagcactaagtacggcctggtgatattggcttaagatttaaaagtgtgctcctcctcgtagtctcagatttgaatctc |
26456505 |
T |
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| Q |
108 |
tctgatgttaatttgagtggtctaattctggaaaattaatgaaaagtgctctctctccatcattttcactagttacttgttttgtaagttgctagctgta |
207 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26456504 |
tccgatgttaatttgagtggtctaattctggaaaattaatggaaagtgctctctctccatc-ttttcactagttacttgttttgtaagttgctagctgta |
26456406 |
T |
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| Q |
208 |
gaaagattcaaattcaaataaaggaattgaaagaacgtaattgtttgctcttttaactacaactacaagcaaataaataagacaatacagtacaatattt |
307 |
Q |
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| T |
26456405 |
gaaagattcaaattcaaataaaggagttgaaagaacgtaattgtttgctcttttaactacaactacaagcaaataaataagacaatacagtacaatattt |
26456306 |
T |
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| Q |
308 |
at |
309 |
Q |
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|| |
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| T |
26456305 |
at |
26456304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 26450098 - 26450014
Alignment:
| Q |
131 |
aattctggaaaattaatgaaaagtgc--tctctctccatcattttcactagttacttgttttgtaagttgctagctgtagaaaga |
213 |
Q |
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| T |
26450098 |
aattcttgaaaattaatggaaagtaccttctctctccatcattttcactagttacttgttttgtaagttgctagctgtagaaaga |
26450014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 51954139 - 51954219
Alignment:
| Q |
54 |
attgacttggaatttgaaagtatgctcctcctcgtagtctcaggtttgaatctctctgatgttaatttgagtggtctaatt |
134 |
Q |
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| T |
51954139 |
attgacttgggacttgggagtatgctcctcctcgaggtctcaggtttgattatctccggtgtcaatttgggtgggctaatt |
51954219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 27266782 - 27266854
Alignment:
| Q |
52 |
atattgacttggaatttgaaagtatgctcctcctcgtagtctcaggtttgaatctctctgatgttaatttgag |
124 |
Q |
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| T |
27266782 |
atattgacttggaatttgaaagtatgctcattctcaaaatctcaggtttgattctctctgatgtcaaattgag |
27266854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 27255353 - 27255428
Alignment:
| Q |
49 |
atgatattgacttggaatttgaaagtatgctcctcctcgtagtctcaggtttgaatctctctgatgttaatttgag |
124 |
Q |
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| T |
27255353 |
atgatattgacttggaatttggaagtatactccttctcaaagtctcaggtttgattttctctgatgtcaaattgag |
27255428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 41666 - 41604
Alignment:
| Q |
72 |
agtatgctcctcctcgtagtctcaggtttgaatctctctgatgttaatttgagtggtctaatt |
134 |
Q |
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| T |
41666 |
agtatgctcctcctcgaggtctcaggttcaattctctctgatgtcaatttgggtgggctaatt |
41604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 10445168 - 10445110
Alignment:
| Q |
76 |
tgctcctcctcgtagtctcaggtttgaatctctctgatgttaatttgagtggtctaatt |
134 |
Q |
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|||||||||||| |||||||||| || |||||||| || |||||||||||| |||||| |
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| T |
10445168 |
tgctcctcctcgaggtctcaggttcgattctctctggtgctaatttgagtgggctaatt |
10445110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 51903907 - 51903849
Alignment:
| Q |
76 |
tgctcctcctcgtagtctcaggtttgaatctctctgatgttaatttgagtggtctaatt |
134 |
Q |
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| T |
51903907 |
tgctcctcctcgtggtctcaggttcgattctctccggtgtcaatttgagtgggctaatt |
51903849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 27259208 - 27259256
Alignment:
| Q |
76 |
tgctcctcctcgtagtctcaggtttgaatctctctgatgttaatttgag |
124 |
Q |
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|||||||||||| || |||||||||| |||||||||||| |||||||| |
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| T |
27259208 |
tgctcctcctcgaggtttcaggtttgattctctctgatgtcaatttgag |
27259256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 4226086 - 4226156
Alignment:
| Q |
53 |
tattgacttggaatttgaaagtatgctcctcctcgtagtctcaggtttgaatctctctgatgttaatttga |
123 |
Q |
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|||||||||||||||||| | ||| ||||||||| || ||||||| || | |||||||||||||||||| |
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| T |
4226086 |
tattgacttggaatttgagaatatactcctcctcaaggtttcaggttcgattatctctgatgttaatttga |
4226156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0180 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 19995 - 19943
Alignment:
| Q |
72 |
agtatgctcctcctcgtagtctcaggtttgaatctctctgatgttaatttgag |
124 |
Q |
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||||||||||||||| |||||||||| || |||||||| |||||||||||| |
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| T |
19995 |
agtatgctcctcctcaaggtctcaggttcgattctctctggtgttaatttgag |
19943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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