View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_9 (Length: 474)
Name: NF6872A_low_9
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 29280091 - 29280376
Alignment:
| Q |
6 |
attttaatcatataattatttggaacacagtttaaatcatgattttaaattgtggttacgctgcaaacctttgtaccataaaaaaggcagctgatgtggt |
105 |
Q |
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| T |
29280091 |
attttaatcttataattatttggaacaaagtttaaatcatgattttaaattgtggttaggctgcaaacctttgtaccataaaaaag-cagctgatgtggt |
29280189 |
T |
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| Q |
106 |
ctaatggttgtgataccgttgcaga--cctcaaaactttttatattgcgactgcaattgcgattgctaacaatttaaacaatggttcaaaattctttgac |
203 |
Q |
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| T |
29280190 |
ctaatggttgtgataccattgcagagacctcaaaaccttttatattg------------cgattgccaacaatttaaacaatggttcaaaattctttaac |
29280277 |
T |
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| Q |
204 |
gacagttgtaaaatggccattagtgagtcaacataagttcttggaccatggtactaatttggttacttttattctttttgattgagtataggaacaacc |
302 |
Q |
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| T |
29280278 |
gacagttgtaaaatggtcattagtgagtcaacataagttcttggaccatggtactaatttgtttacttttattctttttgattgagtataggaacaacc |
29280376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 29280492 - 29280533
Alignment:
| Q |
418 |
cctaaaccaccagaaccatgtgtgctttttgtggatttgcat |
459 |
Q |
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| T |
29280492 |
cctaaaccaccagaaccatgtgtactttttgtggatttgcat |
29280533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 42945056 - 42945084
Alignment:
| Q |
45 |
tgattttaaattgtggttacgctgcaaac |
73 |
Q |
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| T |
42945056 |
tgattttaaattgtggttacgctgcaaac |
42945084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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