View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_94 (Length: 308)

Name: NF6872A_low_94
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_94
NF6872A_low_94
[»] chr1 (3 HSPs)
chr1 (1-308)||(11780118-11780426)
chr1 (118-290)||(10424593-10424765)
chr1 (120-290)||(1624838-1625008)
[»] chr7 (1 HSPs)
chr7 (1-302)||(17158540-17158845)
[»] chr2 (1 HSPs)
chr2 (1-308)||(12101765-12102070)
[»] chr6 (4 HSPs)
chr6 (4-308)||(14977507-14977814)
chr6 (4-175)||(11776308-11776482)
chr6 (119-175)||(9352421-9352477)
chr6 (127-175)||(24353638-24353686)
[»] chr5 (3 HSPs)
chr5 (4-290)||(5781902-5782191)
chr5 (4-290)||(19069420-19069709)
chr5 (118-175)||(11724701-11724758)
[»] chr3 (6 HSPs)
chr3 (118-285)||(16311632-16311799)
chr3 (118-285)||(18488416-18488583)
chr3 (118-285)||(18492626-18492793)
chr3 (118-256)||(16314023-16314161)
chr3 (118-256)||(18495017-18495155)
chr3 (107-270)||(19829018-19829181)
[»] chr8 (1 HSPs)
chr8 (118-274)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 11780426 - 11780118
Alignment:
Q  1 tcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780426 tcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctagtgaggagctgctactagctacgccagtgtttgaaattgttt 11780327  T
Q  101 cccgg-ttgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaa 199  Q
    ||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780326 ccccgattgcatgatgaaatgcattctgagagagtgaagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaa 11780227  T
Q  200 cgctctcggatgatgtggaacataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttga 299  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780226 cgctctcggatgatgtggaacataatcattcgcgcccacaggagctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttga 11780127  T
Q  300 gcaagatga 308  Q
    ||| |||||    
T  11780126 gcacgatga 11780118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 118 - 290
Target Start/End: Complemental strand, 10424765 - 10424593
Alignment:
Q  118 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 217  Q
    |||||||||||||||||||| || | ||||| ||||||||||||||  ||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  10424765 gtgcattctgagagagtggaacaattgcatctgacatcgcgggaggtattggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 10424666  T
Q  218 aacataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 290  Q
    || |||||||||||||||||| ||| |||||||||||||| |||||| || | |||| |||||||||||||||    
T  10424665 aatataatcgttcgcgcccacgggagctggtggagagtcctaagggttcctacgagcgtgtaccacattcatc 10424593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 290
Target Start/End: Complemental strand, 1625008 - 1624838
Alignment:
Q  120 gcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaa 219  Q
    ||||| ||||||||| || |||| ||||| |||||||||||||| ||||| |||||     || || ||||| |||   ||||| |  ||||||||||||    
T  1625008 gcattttgagagagtagaacagttgcatctgacatcgcgggaggtgttggggaaccccacggtggatgatgtcactgttacgctttatgatgatgtggaa 1624909  T
Q  220 cataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 290  Q
    || ||| ||||| |||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||||||    
T  1624908 cacaatagttcgagcccgcgggagctggtcgagagtcccaagggttcccacgagcgtgtaccacattcatc 1624838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 17158845 - 17158540
Alignment:
Q  1 tcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgttt 100  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||  |||||| ||| |||||||||||||||||||||||||    
T  17158845 tcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgttt 17158746  T
Q  101 cccggtt---gcatgatgaagtgcattctgagagagt-ggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactc 196  Q
    ||  |||   ||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||     
T  17158745 cctagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatccgatatcgcgggaggagttggagaaccctgtggttgacgatgttactg 17158646  T
Q  197 caacgctctcggatgatgtggaacataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgt 296  Q
    | || ||||||||||||||||| ||||||| ||||| |||  || |  ||||||||||||| ||||| | |||||||||||||| |||||||||||||||    
T  17158645 cgacactctcggatgatgtggagcataatcattcgcacccctagtagttggtggagagtcccaagggggaccatgagcatgtactacattcatcaattgt 17158546  T
Q  297 tgagca 302  Q
    | ||||    
T  17158545 taagca 17158540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 12101765 - 12102070
Alignment:
Q  1 tcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgttt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||| | || ||| || | ||||||||||||| |||    
T  12101765 tcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagtgtttgaaattattt 12101864  T
Q  101 cccggtt---gcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactcc 197  Q
    |||   |   ||| ||||| |||||| ||||||||| ||||||  | ||| |||||||||||||||||||||||||||   | | ||||||||||||| |    
T  12101865 ccccaattgtgcacgatgacgtgcatcctgagagagcggagcaaacacattcgacatcgcgggaggagttggagaaccccatggctgacgatgttactac 12101964  T
Q  198 aacgctctcggatgatgtggaacata----atcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaat 293  Q
     |  |         ||||||||||||    ||| ||||||||| | ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12101965 gatac---------atgtggaacatatataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgtaccacattcatcaat 12102055  T
Q  294 tgttgagcaagatga 308  Q
    ||||||||| |||||    
T  12102056 tgttgagcacgatga 12102070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 4 - 308
Target Start/End: Original strand, 14977507 - 14977814
Alignment:
Q  4 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 103  Q
    ||||| ||||||||||| ||||| ||| | || ||| ||||||| |  |||||||||||| || ||| |  |||||| |||||| ||||  |||| ||||    
T  14977507 ttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaagttgccagaagctacaccagtgattgagtttgtgtccc 14977606  T
Q  104 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 200  Q
      |||||  | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||     ||||||||||||||| | ||    
T  14977607 cagttgcgcacgatgacgtgcattccgagagagtggagcagtcgcatccgacatcgcgggaggaggtgcagatcccaacggttgacgatgttactgctac 14977706  T
Q  201 gctctcggatgatgtggaacataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgag 300  Q
    ||| ||  |||||||||||||||||| ||||  ||| | ||| |||||||||||||| |||||| ||||||||||||| ||||||||||| |||||| ||    
T  14977707 gctatcttatgatgtggaacataatcattcgaccccgcgggagctggtggagagtcccaagggttcccatgagcatgttccacattcatccattgtttag 14977806  T
Q  301 caagatga 308  Q
    || |||||    
T  14977807 catgatga 14977814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 175
Target Start/End: Complemental strand, 11776482 - 11776308
Alignment:
Q  4 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 103  Q
    ||||||||||  ||||||||||||||| | ||||| | ||||||||| ||||||  ||||||| ||| ||  | ||| |||||||| ||  |||||||||    
T  11776482 ttgtcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgtttccc 11776383  T
Q  104 g-gttg--catgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 175  Q
      ||||  || ||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  11776382 ctgttgtgcacgatgatgtgcattctgagagagtggagcagttgcatcagtcatcgcgggaggagttggagaacc 11776308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 9352477 - 9352421
Alignment:
Q  119 tgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 175  Q
    ||||||||||||||||||| |||| || || ||||||||| |||| |||||||||||    
T  9352477 tgcattctgagagagtggaacagttgcgtctgacatcgcgagaggtgttggagaacc 9352421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 24353686 - 24353638
Alignment:
Q  127 gagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 175  Q
    ||||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  24353686 gagagagcgaagcagttgcatcagacatcgcgggaggagttggagaacc 24353638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 290
Target Start/End: Complemental strand, 5782191 - 5781902
Alignment:
Q  4 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 103  Q
    ||||||||||  ||||||||||||||| | || || |||||  | |  ||||||  ||||||||||| |   |||||||||||||| ||  |||||||||    
T  5782191 ttgtcgtcaaactctttcagctttccattacacaatgtgttcaatagaatttctcctgaggagctgccatgtgctacgccagtgttagaggttgtttccc 5782092  T
Q  104 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 200  Q
      |||||  | ||||| |||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||    || || |||||||||   ||    
T  5782091 ttgttgcgcacgatgacgtgcattctgagagagaggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttactgttac 5781992  T
Q  201 gctctcggatgatgtggaacataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 290  Q
     || || |||||||||||||| |||| ||||  ||| | ||| |||||||||||||| |||||| ||||||||| |||| ||| ||||||    
T  5781991 actttctgatgatgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatc 5781902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 290
Target Start/End: Complemental strand, 19069709 - 19069420
Alignment:
Q  4 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 103  Q
    ||||||||||  ||||||||||||||| | || || | ||||||||| ||||||  | ||||||||| ||  |||||||||||||| ||  || ||||||    
T  19069709 ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc 19069610  T
Q  104 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 200  Q
      |||||  | ||||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||     || || |||||||||   ||    
T  19069609 ctgttgcgcacgatgacgtgcattctgagagagaggagcggttgcatcagacatcgcgagaggagttggagaaccccacggtggaagatgttactgttac 19069510  T
Q  201 gctctcggatgatgtggaacataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 290  Q
     || ||  ||||||||||||| |||| ||||  ||| ||||| |||||||||||||| ||||||  |||||||| | || ||||||||||    
T  19069509 cctttctaatgatgtggaacacaatcattcgatcccgcaggagctggtggagagtcccaagggtttccatgagcgtatatcacattcatc 19069420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 11724701 - 11724758
Alignment:
Q  118 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 175  Q
    ||||||||| ||||||  ||||| | ||||| |||||||||||||| |||||||||||    
T  11724701 gtgcattctaagagagcagagcaattgcatctgacatcgcgggaggtgttggagaacc 11724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 285
Target Start/End: Original strand, 16311632 - 16311799
Alignment:
Q  118 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 217  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16311632 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16311731  T
Q  218 aacataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 285  Q
    || |||||||||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  16311732 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 16311799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 285
Target Start/End: Original strand, 18488416 - 18488583
Alignment:
Q  118 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 217  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18488416 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18488515  T
Q  218 aacataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 285  Q
    || |||||||||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18488516 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18488583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 285
Target Start/End: Original strand, 18492626 - 18492793
Alignment:
Q  118 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 217  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18492626 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18492725  T
Q  218 aacataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 285  Q
    || |||||||||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18492726 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18492793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 16314023 - 16314161
Alignment:
Q  118 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 217  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16314023 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16314122  T
Q  218 aacataatcgttcgcgcccacaggatctggtggagagtc 256  Q
    || |||||||||||||||||| ||| |||||||||||||    
T  16314123 aatataatcgttcgcgcccacgggagctggtggagagtc 16314161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 18495017 - 18495155
Alignment:
Q  118 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 217  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18495017 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18495116  T
Q  218 aacataatcgttcgcgcccacaggatctggtggagagtc 256  Q
    || |||||||||||||||||| ||| |||||||||||||    
T  18495117 aatataatcgttcgcgcccacgggagctggtggagagtc 18495155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 270
Target Start/End: Complemental strand, 19829181 - 19829018
Alignment:
Q  107 tgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctc 206  Q
    |||| ||||| |||||||||||||||| ||||| || ||| | |||||| | || ||||||||||||||    |||  |||||||||||   || || ||    
T  19829181 tgcacgatgacgtgcattctgagagagaggagcggttgcaccagacatcacagggggagttggagaaccccacagtgaacgatgttactgttacactttc 19829082  T
Q  207 ggatgatgtggaacataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccat 270  Q
     |||||||||||||| |||| ||||  ||| | ||| |||||||||||||| |||||| |||||    
T  19829081 tgatgatgtggaacacaatcattcgaacccgcgggagctggtggagagtcccaagggttcccat 19829018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 274
Target Start/End: Original strand, 17459431 - 17459587
Alignment:
Q  118 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 217  Q
    |||||||| |||||||  ||||| | ||||||||||||||||||  ||||||||||||   |||| |||||||| |||   ||||| ||  |||||||||    
T  17459431 gtgcattccgagagagcagagcaattgcatccgacatcgcgggaaaagttggagaaccccatagtggacgatgtcactgttacgctttctaatgatgtgg 17459530  T
Q  218 aacataatcgttcgcgcccacaggatctggtggagagtccgaagggtgcccatgagc 274  Q
    |||| |||| |||| |||| | |||  ||||||||||||  || ||| |||||||||    
T  17459531 aacacaatcattcgagcccgcgggagatggtggagagtctcaacggtccccatgagc 17459587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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