View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6872A_low_95 (Length: 307)
Name: NF6872A_low_95
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_95 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 13555116 - 13554842
Alignment:
| Q |
21 |
ttatgcttctgttccagcactatgcgtcagcttgtacgaaactgtatgcaatgaggccaggcaagatgccaatgcttgcttgaatcttttaaaaactgac |
120 |
Q |
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| T |
13555116 |
ttatgcttctgttccagcactatgcgtcagcttgtatgaaactgtatgcaatgaggcgaggcaagatgccaatgcttgcttgaatcttttaaaaactgac |
13555017 |
T |
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| Q |
121 |
tcaaaaatcacctcagccacaaattatcatgatctctccaagtctatcgtggtttttgcatttaaccaggggttacaggctcaagcttatcttttaaaag |
220 |
Q |
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| T |
13555016 |
tcaaaaatcacctcagccacaaattatcatgacctctccaagtctatcgtggtttttgcatttaaccaagggttacaggctcaagcttatcttttaaaag |
13554917 |
T |
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| Q |
221 |
tggcaaaacaatttcccagtgatcaagctgttagtcaatgtgcaaatgaattttacataatgagtattagatatt |
295 |
Q |
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| T |
13554916 |
tggcaaaacaatttcccagtgatgaagctgttagtcaatgtgcaaatgaattttacataatgagtattagatatt |
13554842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 29 - 288
Target Start/End: Complemental strand, 13559235 - 13558976
Alignment:
| Q |
29 |
ctgttccagcactatgcgtcagcttgtacgaaactgtatgcaatgaggccaggcaagatgccaatgcttgcttgaatcttttaaaaactgactcaaaaat |
128 |
Q |
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| T |
13559235 |
ctgtaccagcacactgtgtcagtttgtatgaaactgtatgcagtgaggccaggcaagatgccaatgcttgcttgaatcttttaaaaactgacccaaaaat |
13559136 |
T |
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| Q |
129 |
cacctcagccacaaattatcatgatctctccaagtctatcgtggtttttgcatttaaccaggggttacaggctcaagcttatcttttaaaagtggcaaaa |
228 |
Q |
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| T |
13559135 |
cacctcagccacaaattatcatgacctctccaaatctatcttgagttttgcatttaacaaggggctagaggatcaagcttatcttttaaaagtggcaaaa |
13559036 |
T |
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| Q |
229 |
caatttcccagtgatcaagctgttagtcaatgtgcaaatgaattttacataatgagtatt |
288 |
Q |
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| T |
13559035 |
caatttcccaataatcaagctattggtcaatgtgcaaatgtattttacaaaacgagtatt |
13558976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 14173132 - 14173071
Alignment:
| Q |
97 |
tgcttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctc |
158 |
Q |
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| T |
14173132 |
tgcttgaatattttgaaaactgacccaaaaatcacctcagccacaaattaccatgacctctc |
14173071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 14177668 - 14177607
Alignment:
| Q |
97 |
tgcttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctc |
158 |
Q |
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| T |
14177668 |
tgcttgaatattttgaaaactgacccaaaaatcacctcagccacaaattaccatgacctctc |
14177607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 14166301 - 14166239
Alignment:
| Q |
97 |
tgcttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctcc |
159 |
Q |
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| T |
14166301 |
tgcttgaatattttgaaaactgacccaaaaatcacctcagcgacgaattaccatgacctctcc |
14166239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 13505912 - 13505964
Alignment:
| Q |
100 |
ttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatga |
152 |
Q |
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| T |
13505912 |
ttgaatcttttgaaaactgacccaaatatcgccttagccacaaattatcatga |
13505964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 13528555 - 13528614
Alignment:
| Q |
100 |
ttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctcc |
159 |
Q |
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| T |
13528555 |
ttgaatcttatgaaaactgacccaaatatccccttagccacaaattatcatgacctctcc |
13528614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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