View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6872A_low_98 (Length: 301)
Name: NF6872A_low_98
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6872A_low_98 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 26 - 290
Target Start/End: Original strand, 37598282 - 37598551
Alignment:
| Q |
26 |
catattacttccatataagtgggttttatagtgttctttgtgatggaattgtatacaaa-----cttgactgtccctgttttctctatggaagaaggtgg |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37598282 |
catattacatccatataagtgggttttatagtgttctttgtgatggaattgtatacaaattaaacttgactgtccctgttttctctatggaagaaggtgg |
37598381 |
T |
|
| Q |
121 |
tatagaattgtaaacaaactatggcgacgttcataatagcaatatggacatgtgcttccttcaatggagttgttaatttttaagattctgaaaaagaggt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37598382 |
tatagaattgtaaacaaactatggcgacgttcataatagcaatatggacatgtgcttccttcaatggagttgttaatttttaagattctgaaaaagaggt |
37598481 |
T |
|
| Q |
221 |
ctgtgttgcaatagaaagaagaagttccaagagtttcgtgagtaattcgcgaaatatgtttttgcagtat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37598482 |
ctgtgttgcaatagaaagaagaagttccaagagtttcgtgagtaattcgcgaaatatgttttcgcagtat |
37598551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 34603483 - 34603395
Alignment:
| Q |
111 |
aagaaggtggtatagaattgtaaacaaactatggcgacgttcataatagcaatatggacatgtgcttccttcaatggagttgttaattttt |
201 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||||| |||||||| ||| | |||||||| ||||||||||||||||||||| |
|
|
| T |
34603483 |
aagaaggtggtatgaaattgtaaacaaaccatggctacgttcatgatagcaatctgggc--gtgcttccgtcaatggagttgttaattttt |
34603395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University