View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6872A_low_99 (Length: 300)

Name: NF6872A_low_99
Description: NF6872A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6872A_low_99
NF6872A_low_99
[»] chr1 (16 HSPs)
chr1 (1-296)||(13244622-13244917)
chr1 (1-205)||(12963976-12964180)
chr1 (1-213)||(30368209-30368421)
chr1 (14-204)||(13271474-13271664)
chr1 (1-281)||(13100812-13101091)
chr1 (1-288)||(13080966-13081253)
chr1 (1-213)||(13094278-13094490)
chr1 (1-213)||(13070277-13070489)
chr1 (1-288)||(13085911-13086198)
chr1 (1-283)||(13007009-13007291)
chr1 (1-213)||(13129707-13129919)
chr1 (1-283)||(13204268-13204550)
chr1 (3-213)||(13161400-13161610)
chr1 (1-205)||(19279269-19279473)
chr1 (1-287)||(13065314-13065600)
chr1 (145-204)||(13010661-13010720)
[»] chr7 (1 HSPs)
chr7 (1-159)||(12164206-12164364)
[»] chr6 (5 HSPs)
chr6 (2-88)||(377572-377658)
chr6 (5-88)||(341859-341942)
chr6 (82-173)||(31380253-31380344)
chr6 (2-87)||(346845-346930)
chr6 (2-87)||(355504-355589)
[»] chr8 (1 HSPs)
chr8 (1-30)||(36668187-36668216)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 13244622 - 13244917
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||| || |||| |||||||||||||||||||||||||||    
T  13244622 aatatggggagatgattgcttggaatttaagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaat 13244721  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244722 gcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 13244821  T
Q  201 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataacaaagttg 296  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13244822 gtcaccctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttg 13244917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 12963976 - 12964180
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||  ||| |||| || || ||||| ||||||||||| ||||||    
T  12963976 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaat 12964075  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||| |||||||||| |||| | ||||||||||    
T  12964076 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaag 12964175  T
Q  201 gtcac 205  Q
    |||||    
T  12964176 gtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 30368209 - 30368421
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    ||||||||||||||||||| |||||||||||||||| |||||| |||| |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  30368209 aatatggggagaagattgcatggaatttaagcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 30368308  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
     |||| |||||||||||||| || |||||| |||| || ||||||||||| |||||||||||| | |||||||||||||||| ||||||||| |||||||    
T  30368309 acaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaag 30368408  T
Q  201 gtcaccctgtaac 213  Q
    |||||||||||||    
T  30368409 gtcaccctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 13271664 - 13271474
Alignment:
Q  14 gattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaa 113  Q
    ||||||||||| ||||||||||| ||||||||||| | || ||||   ||| ||||||| || ||||||||||||||||| |||||||||||||||||||    
T  13271664 gattgcttggagtttaagcctgagagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaa 13271565  T
Q  114 gttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 204  Q
    | ||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||    
T  13271564 gctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 13101091 - 13100812
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| | || |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13101091 aatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 13100992  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
     |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13100991 -caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaag 13100893  T
Q  201 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcattt 281  Q
    |||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||| || ||| ||||||||||||||    
T  13100892 gtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 13080966 - 13081253
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||||| | |||||||   ||| |||| || |||||||| ||||||||||| || |||    
T  13080966 aatatggggagaggattgcttggagtttaagcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaat 13081065  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
    |||||||| ||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||| |  | ||||  ||||||| ||| |||||||||||||    
T  13081066 gcaggtccaagaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaag 13081165  T
Q  201 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 288  Q
    ||||| |  |||  |  ||   |||||||  |||||||||| |||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  13081166 gtcactcaataattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 13094490 - 13094278
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || |||||||||||||||||||||||     
T  13094490 aatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaac 13094391  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
     |||| || |||| |||||| || ||||||||||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| |||||||||||||||||    
T  13094390 acaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaag 13094291  T
Q  201 gtcaccctgtaac 213  Q
    |||||||||||||    
T  13094290 gtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 13070277 - 13070489
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| |||| |  | ||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13070277 aatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgttccatcttacaagttcatagctttcaat 13070376  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
     ||||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13070377 acaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaag 13070476  T
Q  201 gtcaccctgtaac 213  Q
    |||||||||||||    
T  13070477 gtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 13086198 - 13085911
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    |||||||||  | ||| |||| ||||||||||| || ||||||||||| | || ||||   ||| | ||||| || |||| |||||||||||| || |||    
T  13086198 aatatggggtaaggatcgcttcgaatttaagcccgagagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaat 13086099  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||    
T  13086098 gcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaag 13085999  T
Q  201 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 288  Q
    ||||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | ||||||||||| |||||||||||    
T  13085998 gtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatgaatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13007291 - 13007009
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| | || |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13007291 aatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 13007192  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
     ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||||  ||||||||   ||||||| |||| ||||||||| ||    
T  13007191 acaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcag 13007092  T
Q  201 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 283  Q
    |||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||  || ||| ||||||||||||||||    
T  13007091 gtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 13129919 - 13129707
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || |||||||||||| ||||||||||     
T  13129919 aatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaac 13129820  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
     |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13129819 acaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaag 13129720  T
Q  201 gtcaccctgtaac 213  Q
    |||||||||||||    
T  13129719 gtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13204550 - 13204268
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| |||| |  | ||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13204550 aatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaat 13204451  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
     ||||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||| |||| |||| || | |||||||    
T  13204450 acaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaag 13204351  T
Q  201 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 283  Q
    ||||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||  || ||| ||||||||||||||||    
T  13204350 gtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 13161610 - 13161400
Alignment:
Q  3 tatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgc 102  Q
    ||||||| ||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || ||||||||||||||| |||||||  |    
T  13161610 tatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacac 13161511  T
Q  103 aggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggt 202  Q
    ||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| |||||||||||||||||||    
T  13161510 aggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggt 13161411  T
Q  203 caccctgtaac 213  Q
    |||| ||||||    
T  13161410 caccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 19279269 - 19279473
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    ||||||||| || |||||| | ||||||  |||||| ||||||||||||| |||||||   ||| ||||||| || || |||||||||||||| || |||    
T  19279269 aatatggggtgatgattgcctagaatttcggcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaat 19279368  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
    |||||||| ||||| ||| | || ||||||||||  ||  ||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||||    
T  19279369 gcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaag 19279468  T
Q  201 gtcac 205  Q
    |||||    
T  19279469 gtcac 19279473  T

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Target: chr1; HSP #15
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 13065314 - 13065600
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    ||||||||||||||| ||| |||||||||||||||| |||||||||||    || |||   ||| ||||||| |||||||||||||||||||||||||||    
T  13065314 aatatggggagaagactgcatggaatttaagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaat 13065413  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 200  Q
    ||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  || |  ||||||||||| |||||||  | ||||| |    
T  13065414 gcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatg 13065513  T
Q  201 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatata 287  Q
    |||| |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||| ||||||||||||||||||||    
T  13065514 gtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcactaaaagatgcatttgatata 13065600  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  145 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 204  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 12164364 - 12164206
Alignment:
Q  1 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 100  Q
    ||||||||||||||||||||||||||||||||| || || ||||| ||    | |||||| || ||  |||| || |||||||||||||| ||||| |||    
T  12164364 aatatggggagaagattgcttggaatttaagccagagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgcttttaat 12164265  T
Q  101 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgc 159  Q
    || || || || |||||| | || || ||||| |||||  || | ||||||||||||||    
T  12164264 gctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgc 12164206  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 377572 - 377658
Alignment:
Q  2 atatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttc 88  Q
    ||||||||||||||||||||||| || ||||| || ||||||||||| |  |||||  ||||||| ||||  |||||||| ||||||    
T  377572 atatggggagaagattgcttggagttcaagccagagagatggatatctgagagaggtagcattgttcatgaaccgtcttataagttc 377658  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 341859 - 341942
Alignment:
Q  5 tggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttc 88  Q
    |||||| ||||||||||||| |||||||| || || ||||| || |  ||||||||||||||  |||  |||||||||||||||    
T  341859 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttc 341942  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 31380253 - 31380344
Alignment:
Q  82 caagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 173  Q
    |||||||||| |||||||| |||| ||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 346930 - 346845
Alignment:
Q  2 atatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagtt 87  Q
    ||||||||| ||||||| ||||| || ||||| || ||||||||||| |  |||||||||||||| |||   || |||||||||||    
T  346930 atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtt 346845  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 355589 - 355504
Alignment:
Q  2 atatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagtt 87  Q
    ||||||||| ||||||| ||||| || ||||| || ||||||||||| |  |||||||||||||| |||   || |||||||||||    
T  355589 atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtt 355504  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 36668216 - 36668187
Alignment:
Q  1 aatatggggagaagattgcttggaatttaa 30  Q
    ||||||||||||||||||||||||||||||    
T  36668216 aatatggggagaagattgcttggaatttaa 36668187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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